PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00013.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 217aa MW: 24352.1 Da PI: 7.4043 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.2 | 1.5e-37 | 25 | 85 | 3 | 63 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++ ++cprC+stntkfCyynnys sqPr+fCk+CrryWt GG+lrn+P+Gg +rk+kksss Sme2.5_00013.1_g00005.1 25 QALKNCPRCNSTNTKFCYYNNYSFSQPRFFCKNCRRYWTDGGSLRNIPIGGVSRKSKKSSS 85 55679****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-22 | 11 | 75 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-32 | 27 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.652 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEEIIVPKNT RKIRPYHHHQ QQKDQALKNC PRCNSTNTKF CYYNNYSFSQ PRFFCKNCRR 60 YWTDGGSLRN IPIGGVSRKS KKSSSNIMKN NITSPKVQDI IPPHDDKGVV DQDINLDFSS 120 DFKIICELIQ VPNDSFMPIM PNNLVSSTLD HGLIGSSSTS GGYECNNIVQ DLQEATTTTS 180 GGSLFPFEDL KQVSNTSEQN RDGESSSEYC NAILGGH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 1e-133 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244646.1 | 1e-104 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
TrEMBL | M1A4Z8 | 7e-97 | M1A4Z8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014843 | 1e-97 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 2e-32 | Dof family protein |