PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g098460.1.1 | ||||||||
Common Name | LOC101263298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 210aa MW: 23499.3 Da PI: 5.8749 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2.1e-24 | 38 | 122 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f kvltpsdv+++ +v+p+++a ++ + + ++ ++d+s +sW++kl y+++s+++++t+GW +Fv+a++Lk+gD+++F l + Solyc12g098460.1.1 38 FHKVLTPSDVGNKT-FVIPRRYALKYfsH--IQHNEEVDFYDSSTQSWRFKLFYCQSSKKFTFTRGWHKFVQAKNLKAGDTIIFNLCE 122 89*********997.***********643..445669***********************************************9754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-25 | 29 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.23E-22 | 37 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.08E-20 | 37 | 120 | No hit | No description |
PROSITE profile | PS50863 | 13.987 | 37 | 142 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-22 | 38 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-15 | 38 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEGQSNNVSD SRLMKGVLDE QNSQPTMGNS ESSLQQLFHK VLTPSDVGNK TFVIPRRYAL 60 KYFSHIQHNE EVDFYDSSTQ SWRFKLFYCQ SSKKFTFTRG WHKFVQAKNL KAGDTIIFNL 120 CEIKNGTHEN SNTFVIDVVK NDEGLSMDLA LNHNDVAVDV DAAPNDEGLP MDLALNHNDV 180 AVDVDAAPTP VLLFGKQIGW TKSKRGNEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-15 | 35 | 135 | 5 | 108 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-15 | 35 | 135 | 5 | 108 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g098460.1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019067024.2 | 1e-156 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
TrEMBL | A0A3Q7JYQ8 | 1e-155 | A0A3Q7JYQ8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g098460.1.1 | 1e-156 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16375 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 9e-24 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g098460.1.1 |
Entrez Gene | 101263298 |
Publications ? help Back to Top | |||
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