PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g056790.1.1

Common Name

SlSRN1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 591aa MW: 66500.3 Da PI: 4.6555

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g056790.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.4	1.7e-50	23	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtdeelv +yLkkk+ gk++ l ++i+e+d+yk+eP+dLp +k+k+++++w+fFs+rd+ky++g r+nr tk+g Wk tgkd+ Solyc12g056790.1.1 23 PPGFRFHPTDEELVLYYLKKKICGKRILL-DAIAETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARANRGTKRGHWKVTGKDR 112 9***********************999.99**********96559999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++++vglkktLvfykgrap ge+tdWvmhey++ Solyc12g056790.1.1 113 IIMC-NSRAVGLKKTLVFYKGRAPVGERTDWVMHEYTM 149 .999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-59	17	172	IPR003441	NAC domain
PROSITE profile	PS51005	55.156	22	172	IPR003441	NAC domain
Pfam	PF02365	8.9E-26	23	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MKMFELSDSD SFAVFASSKN VFPPGFRFHP TDEELVLYYL KKKICGKRIL LDAIAETDVY 60 KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARANRGT KRGHWKVTGK DRIIMCNSRA 120 VGLKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKKCQNA QDYYALYKVF KKSGSGPKNG 180 EQYGAPFREE EWADDECPSA KGFVHQDNST NHVIEAPSVD GGLEELLNPV LMEPLSVDYD 240 YAVEQLVQEE DTRSTLLYHS AKEVNFPHRS AVIAPAKESF DLTQSGTSQR QLHEALEVTS 300 APVIYEQQPH VVEEDFLEMD DLLGPEPSTQ NFDNLGPCVQ NFDEAGQSGQ NFDMPAGNFE 360 DLPFDYFDGL AEFDLYHDAS LLDDVRTTEV GQNTEPHMNN LVNGSVNPAS TTYINTFQHE 420 MMNNQPMYLN NSEQISNQLW VHDQRFNISY PSEANQLVAP PATSGVVYDS ILANHPMDAN 480 QNQLPNQDEG TPSWLTSQLW AFVDSIPTAP AIAAESPVVN SAFKRMSSFS KMRINARNMN 540 VAAAGNTATS RSSRYSKNGL FYFSFVGILC AILCVLLGTF VDILRRPISS *

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MKMFELSDSD SFAVFASSKN VFPPGFRFHP TDEELVLYYL KKKICGKRIL LDAIAETDVY  60
KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARANRGT KRGHWKVTGK DRIIMCNSRA  120
VGLKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKKCQNA QDYYALYKVF KKSGSGPKNG  180
EQYGAPFREE EWADDECPSA KGFVHQDNST NHVIEAPSVD GGLEELLNPV LMEPLSVDYD  240
YAVEQLVQEE DTRSTLLYHS AKEVNFPHRS AVIAPAKESF DLTQSGTSQR QLHEALEVTS  300
APVIYEQQPH VVEEDFLEMD DLLGPEPSTQ NFDNLGPCVQ NFDEAGQSGQ NFDMPAGNFE  360
DLPFDYFDGL AEFDLYHDAS LLDDVRTTEV GQNTEPHMNN LVNGSVNPAS TTYINTFQHE  420
MMNNQPMYLN NSEQISNQLW VHDQRFNISY PSEANQLVAP PATSGVVYDS ILANHPMDAN  480
QNQLPNQDEG TPSWLTSQLW AFVDSIPTAP AIAAESPVVN SAFKRMSSFS KMRINARNMN  540
VAAAGNTATS RSSRYSKNGL FYFSFVGILC AILCVLLGTF VDILRRPISS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-46	22	149	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.2583	0.0	callus\| cell culture\| flower\| fruit\| leaf

Function -- GeneRIF ? help Back to Top
SlSRN1 is a positive regulator of defense response against B. cinerea and Pst DC3000 but is a negative regulator for oxidative and drought stress response in tomato.[SlSRN1] [PMID: 25010573]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g056790.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013549	0.0	Lycopersicon esculentum clone 132273F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304297.1	0.0	stress-related NAC1
TrEMBL	A0A3Q7JB86	0.0	A0A3Q7JB86_SOLLC; Uncharacterized protein
STRING	Solyc12g056790.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3212	24	51
Representative plant	OGRP9932	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-133	NAC domain containing protein 17

Link Out ? help Back to Top
Phytozome	Solyc12g056790.1.1
Entrez Gene	101255476

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Liu B, et al. Tomato NAC transcription factor SlSRN1 positively regulates defense response against biotic stress but negatively regulates abiotic stress response. PLoS ONE, 2014. 9(7): p. e102067 [PMID:25010573]