PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g056510.1.1

Common Name

LOC101262091

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 652aa MW: 72092.5 Da PI: 7.0805

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g056510.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.8	1.7e-29	72	155	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r+em+ +++++lk+plWeevs+k++e g++rs+k+Ckek+en+ k+++++k+g+ ++ + +t+++fdql+ Solyc12g056510.1.1 72 RWPRQETLALLKIRSEMDVVFKDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLQ 155 8******************************************************************96..66678****98 PP
2	trihelix	101.7	5.7e-32	457	542	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi +r+ ++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea Solyc12g056510.1.1 457 RWPKEEIEALISLRTCLDLKYQENGPKGPLWEEISSGMRKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 542 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	65	129	IPR017877	Myb-like domain
SMART	SM00717	0.002	69	131	IPR001005	SANT/Myb domain
CDD	cd12203	1.88E-24	71	136	No hit	No description
Pfam	PF13837	4.9E-19	71	157	No hit	No description
SMART	SM00717	0.0024	454	516	IPR001005	SANT/Myb domain
Pfam	PF13837	1.7E-21	456	543	No hit	No description
PROSITE profile	PS50090	7.399	456	514	IPR017877	Myb-like domain
CDD	cd12203	1.42E-27	456	521	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.5E-4	456	513	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MLGVSSSLIA SSNTSITAGA AGDGAAISAA PSQLAPPPQE APESGGSSEG GGGGGDLSIG 60 GEDGERNSGG NRWPRQETLA LLKIRSEMDV VFKDSSLKGP LWEEVSRKLA ELGYHRSAKK 120 CKEKFENVYK YHRRTKDGRA SKADGKTYRF FDQLQALENN PSSHSNIPPP PLAATPITMA 180 MPMRSGNNSA NPPMPTPTPT PQNHNHFFSV SQKSVVTGAA QPAVMTAPAL PLSQVPIGNN 240 NLNQMHRPQG NTTTTKTSFL SNSTSSSSST SSDEDIQRRQ MKKRKWKEFF ESLMKDVIEK 300 QEELQKKFLE TLEKRERDRL MREEAWRVQE MARLNREHDL LVQERSMAAA KDATIIAFLQ 360 KITEQQNTQT PNSTNNTSPS PFPIAQIQLK LSEKPFSTPP QPQPQPSATA VSLPMTIHTP 420 TPAPPQTLTL PVVSSKSLEP PKSDNGGENF SPASSSRWPK EEIEALISLR TCLDLKYQEN 480 GPKGPLWEEI SSGMRKIGYN RNAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL 540 EALYKEKAKL EPVPHNTTFG LTPQNNPPPP PPPIMAQPEQ QWPIPQNQLH QQNRDHHHDN 600 ESDSMDHDLE EDEDEDEEDE GNGYEIIITN KQQSSSMAAT PVTTTTSAAA V*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MLGVSSSLIA SSNTSITAGA AGDGAAISAA PSQLAPPPQE APESGGSSEG GGGGGDLSIG  60
GEDGERNSGG NRWPRQETLA LLKIRSEMDV VFKDSSLKGP LWEEVSRKLA ELGYHRSAKK  120
CKEKFENVYK YHRRTKDGRA SKADGKTYRF FDQLQALENN PSSHSNIPPP PLAATPITMA  180
MPMRSGNNSA NPPMPTPTPT PQNHNHFFSV SQKSVVTGAA QPAVMTAPAL PLSQVPIGNN  240
NLNQMHRPQG NTTTTKTSFL SNSTSSSSST SSDEDIQRRQ MKKRKWKEFF ESLMKDVIEK  300
QEELQKKFLE TLEKRERDRL MREEAWRVQE MARLNREHDL LVQERSMAAA KDATIIAFLQ  360
KITEQQNTQT PNSTNNTSPS PFPIAQIQLK LSEKPFSTPP QPQPQPSATA VSLPMTIHTP  420
TPAPPQTLTL PVVSSKSLEP PKSDNGGENF SPASSSRWPK EEIEALISLR TCLDLKYQEN  480
GPKGPLWEEI SSGMRKIGYN RNAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL  540
EALYKEKAKL EPVPHNTTFG LTPQNNPPPP PPPIMAQPEQ QWPIPQNQLH QQNRDHHHDN  600
ESDSMDHDLE EDEDEDEEDE GNGYEIIITN KQQSSSMAAT PVTTTTSAAA V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	284	QRRQMKKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8271	0.0	callus\| fruit\| leaf

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g056510.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232935	1e-15	Solanum lycopersicum chromosome 9 clone C09HBa0067J16, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010314480.1	0.0	trihelix transcription factor GT-2-like
TrEMBL	A0A3Q7JB43	0.0	A0A3Q7JB43_SOLLC; Uncharacterized protein
STRING	Solyc12g056510.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	9e-65	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc12g056510.1.1
Entrez Gene	101262091

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]