PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g013660.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 354aa    MW: 40581.5 Da    PI: 8.6766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g013660.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17122171255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+WvAeIr p++   r+r +lg+f +aeeAa a++  + +l+g
  Solyc12g013660.1.1 122 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFESAEEAAFAYDVEAFRLRG 171
                         8*******9.**********954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-33121181No hitNo description
PfamPF008471.6E-10122171IPR001471AP2/ERF domain
SMARTSM003807.3E-38122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-31122180IPR001471AP2/ERF domain
PROSITE profilePS5103223.604122179IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-22122180IPR016177DNA-binding domain
PRINTSPR003673.2E-10123134IPR001471AP2/ERF domain
PRINTSPR003673.2E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MKNIESIDNL QSIMSMYRPL KKLKISSSSQ HNSLRSSGDG VEPVAQRIRA RGYEPQFRFP  60
FALDDPPLSS CHINWQSLTQ NQTMISFAPQ SWFNQCRIID NGTRTTSMMN VYGTVSSPAS  120
KRYRGVRQRH WGKWVAEIRL PRKRTRLWLG TFESAEEAAF AYDVEAFRLR GTDARLNFPH  180
LFLGDLAPFD NNINVTNSAS PSTTSFAKNP FQIQHNKRFI RQCRNKKIVP SAVEQSTSVF  240
DKEIMMQDKA AYNKPLWYDP SQDSVHNESL VHETSQTMMF DGSDFYEPTP KYTNNIQQEN  300
SDMWKNVLQP TPFGNYSICT DDNLQQQKQQ CDFTITDPGF GDNVFDFSSK LLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20121179160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20121179463ATERF1
3gcc_A2e-20121179463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g013660.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0872006e-22Solanum lycopersicum complete chloroplast genome, cultivar IPA-6
GenBankDQ3479596e-22Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome
GenBankJF4144166e-22Solanum lycopersicum cultivar H8878-1 LCV resistance marker genomic sequence
GenBankKC1476346e-22Solanum lycopersicum APRR2-like protein mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355177.10.0ethylene response factor H.13
TrEMBLM1B8H70.0M1B8H7_SOLTU; Uncharacterized protein
STRINGSolyc12g013660.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.14e-32ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]