PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g068620.1.1 | ||||||||
Common Name | LOC101263872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 30390.7 Da PI: 8.8188 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.5 | 2.9e-45 | 6 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 pGfrF Pt+eel+++yL+kk+egkk el++vi+ v iy+++Pw+Lpk + +++++w+fF++r++++a+g r+ r+t+ gyWkatg Solyc11g068620.1.1 6 SPGFRFYPTEEELISFYLHKKLEGKKPELDRVIPVVTIYDFDPWHLPKfhgelC-MGDREQWFFFVPRQEREARGGRPCRTTNCGYWKATG 95 69***************************999***************6566532.34667******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ Solyc11g068620.1.1 96 SPSYVYSSNNKVIGVKKSMVFYKGKAPTGKKTKWKMNEYRA 136 ***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.062 | 5 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-49 | 5 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-23 | 7 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVEIISPGFR FYPTEEELIS FYLHKKLEGK KPELDRVIPV VTIYDFDPWH LPKFHGELCM 60 GDREQWFFFV PRQEREARGG RPCRTTNCGY WKATGSPSYV YSSNNKVIGV KKSMVFYKGK 120 APTGKKTKWK MNEYRAIQEE VNSTLAIPKL RHEMSLCRIY VISGSFRAFD RRPIAPTITR 180 EPSKSIINQG GISMENVTKM EAISDENLFM EEQDYVNLNH NDQIPIINQE ININSHNNKR 240 VKSNLHDETL ISGWEQFNWM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-34 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-34 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-34 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-34 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 5e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 5e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 5e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 5e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 5e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 5e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 5e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 4e-34 | 5 | 160 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 4e-34 | 5 | 160 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.15167 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g068620.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217004 | 0.0 | Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251070.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-81 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3Q7IZW1 | 0.0 | A0A3Q7IZW1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g068620.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 8e-84 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g068620.1.1 |
Entrez Gene | 101263872 |
Publications ? help Back to Top | |||
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