PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g066420.1.1
Common NameLOC101263182
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 385aa    MW: 43357.7 Da    PI: 8.6766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g066420.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07228250123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++Cgk F+r  nL+ H+r H
  Solyc11g066420.1.1 228 HYCQICGKGFKRDANLRMHMRAH 250
                         68*******************99 PP
2zf-C2H212.20.00055323346123
                         EEETTTT.EEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                         y+C+ C+ ksFs  s+L++H + +
  Solyc11g066420.1.1 323 YVCKRCNkKSFSVLSDLRTHEKHC 346
                         9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.46E-6227252No hitNo description
Gene3DG3DSA:3.30.160.603.4E-6228254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632228255IPR007087Zinc finger, C2H2
SMARTSM003550.0028228250IPR015880Zinc finger, C2H2-like
PfamPF128740.0025229248No hitNo description
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SMARTSM0035572285318IPR015880Zinc finger, C2H2-like
SMARTSM0035518323345IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MIQGTSSSAN NPQNIPLYSS NHHPNNNIQE DIFSSSSSSY QQNSFLFNLS LLKEKVHQVQ  60
SLATMFITPD NQTIIHPPPE SISMIIANMG TLIQEIITTS SSLMFSCQKI VLDSTSLSQN  120
SSRYREPSQN DVGHGQGQGQ VDHLLQDYDW YVDNYNSNCN THEDNKNHVT SSSTIIASST  180
ISHDNYYSKE FGKKELLLST SKGKVVNEEN NYDIVELDAS DLLAKYTHYC QICGKGFKRD  240
ANLRMHMRAH GDEYKSSAAL SNPMKRINDL TSDGSLKSSS NTIKYSCPQE GCRWNKKHAK  300
FQPLKSMVCV KNHYKRSHCP KMYVCKRCNK KSFSVLSDLR THEKHCGDLK WQCSCGTTFS  360
RKDKLMGHVS LFVGHTPLIK QSAR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.227550.0callus| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g066420.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250985.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-105STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3Q7IYQ10.0A0A3Q7IYQ1_SOLLC; Uncharacterized protein
STRINGSolyc11g066420.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-89C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]