PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g064800.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SRS
Protein Properties Length: 380aa    MW: 40678.9 Da    PI: 8.4117
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g064800.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.21.9e-671353035154
              DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsal 86 
                         +++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa++rrerq + a++++++++++         +++++k++r  +s++++++
  Solyc11g064800.1.1 135 STTCQDCGNQAKKDCTHRRCRTCCKSRGYDCNTHVKSTWVPASRRRERQLMGASTTTTTTNRNvvaagsssqSTSSAKKPRLVNSQTTTTA 225
                         679*********************************************99999988887777789999988777788899999999999** PP

              DUF702  87 sstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         s+t++s+++++++++tss          lP +v+++avf+cvrv+svd+ge+e+aYq++v+igGhvfkG+LydqGl+e
  Solyc11g064800.1.1 226 SHTSTSNNTPPRSFDTSSshqdasfkgsLPGQVRAPAVFKCVRVTSVDEGEDEYAYQAVVKIGGHVFKGFLYDQGLDE 303
                         ****************999********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.1E-63135302IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.7E-27137179IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-29254301IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MWSASASSRQ MQINYGLQPA EMGMFVVHPA SFHQNHENTI NFDPHGNSND NSNLSNTNTS  60
LGVGVGVIPL LTATPLSNMV TFDDQDLVRN NRGGNNGGFQ FFSNEQQQNS TTNYNTKNST  120
SSNNIILGGG GSISSTTCQD CGNQAKKDCT HRRCRTCCKS RGYDCNTHVK STWVPASRRR  180
ERQLMGASTT TTTTNRNVVA AGSSSQSTSS AKKPRLVNSQ TTTTASHTST SNNTPPRSFD  240
TSSSHQDASF KGSLPGQVRA PAVFKCVRVT SVDEGEDEYA YQAVVKIGGH VFKGFLYDQG  300
LDEPKDNNNF PNLSDLHLGA VATNEHLYAA STSGGGGLLG GGSNYGQYIV ICDLQLSTAK  360
VAFMPFLLGC IEPLKTLKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.110630.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g064800.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313236.10.0protein LATERAL ROOT PRIMORDIUM 1 isoform X1
SwissprotQ94CK94e-79LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A3Q7IYL50.0A0A3Q7IYL5_SOLLC; Uncharacterized protein
STRINGSolyc11g064800.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76552331
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.48e-69Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]