PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g022470.1.1

Common Name

LOC101257428

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 304aa MW: 33230.8 Da PI: 6.6117

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g022470.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	5.1e-34	19	73	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Solyc11g022470.1.1 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	16	76	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-32	18	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.35E-18	18	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-25	19	74	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	21	72	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-23	106	152	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDPANEGNNL NNNPSLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT 60 IYHVKSHLQK YRLAKYLPDS SSDGKQSDKK ESGDMLSSLD GSSTGVQINE ALKLQMEVQK 120 RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ QRLSGVLSEV PDSGVTPSAA GDNGLDSDNR 180 TDPGTPAPTS ESPHIDTSVQ EHGRSKSLSI DQSFSSQHEP LTPDSGCRET SPINSSEGER 240 SSKKQRVGTF TKADMLLPHQ ILESSLSSRY EQPNPVFVAR EQFNLSSGLS LGNEGPNVRG 300 SNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-24	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-24	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-24	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-24	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.5730	0.0	callus\| floral bud\| flower\| fruit\| leaf\| seed\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g022470.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014462	0.0	Lycopersicon esculentum clone 133809F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004250431.1	0.0	myb family transcription factor PHL7
Refseq	XP_010312875.1	0.0	myb family transcription factor PHL7
Refseq	XP_010312876.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	1e-120	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A3Q7IUE3	0.0	A0A3Q7IUE3_SOLLC; Uncharacterized protein
STRING	Solyc11g022470.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-86	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc11g022470.1.1
Entrez Gene	101257428

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]