PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g008900.1.1
Common NameLOC101255551
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 434aa    MW: 47178.4 Da    PI: 8.507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g008900.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.5e-114873227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +++ C+++ rtG C++G++C+F+H+p
  Solyc11g008900.1.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                        6899********************97 PP
2zf-CCCH39.21.2e-1294118327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C++f++tGtCk+G++CkF+H++
  Solyc11g008900.1.1  94 QPECQYFLKTGTCKFGATCKFHHPK 118
                         799********************96 PP
3zf-CCCH38.91.5e-12140164327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+G++CkF+H++
  Solyc11g008900.1.1 140 ESECAYYMRTGQCKFGSTCKFHHPQ 164
                         679********************97 PP
4zf-CCCH37.93e-12293319127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ C+F+H++
  Solyc11g008900.1.1 293 PGQPECQFYMKTGDCKFGAVCRFHHPR 319
                         5789*********************96 PP
5zf-CCCH40.25.8e-13339365127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF H++
  Solyc11g008900.1.1 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4834674IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-54673IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-45272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23491119IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-691118IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1094118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-597117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943137165IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5137164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4143163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596292320IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6292319IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-9294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6296322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5298322IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037338366IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5341365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4343363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRDSIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RIGQPECQYF LKTGTCKFGA TCKFHHPKDK  120
AGIAGRVTLN VMGYPLRPNE SECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP  180
VPSATTPGQL SYPLSRGSFI PGARWQGPSG YTPLIVPQGV VSVPGFAYSG QMGSVSSPEG  240
QGQTAGNNQV YGTSRSSDPV AMGSQAVTSP YRQASGPMGY YALQEENVFP ERPGQPECQF  300
YMKTGDCKFG AVCRFHHPRE RLIPPPDCLL SPIGLPLRPG EPLCIFYSRY GICKFGPSCK  360
FDHPMTVFTY SIAASSATDA PTVQRLLGSS SGTSALNMTS EGLVEAVSTK PRRLSLSETR  420
KMPSGDNNID REG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.26080.0callus| cell culture| flower| fruit| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g008900.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0Lycopersicon esculentum clone 133280F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250094.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_015058355.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A3Q7IQM10.0A0A3Q7IQM1_SOLLC; Uncharacterized protein
STRINGSolyc11g008900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]