PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g086370.1.1
Common NameLOC101262579
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 511aa    MW: 56318.4 Da    PI: 4.6981
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g086370.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.62.1e-961385051374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                         lv+ +++cA+a +++   la++l+ ++  +  +++ g +m+++a++f+ A  ++++r        l p++      +     ++  +  + 
  Solyc10g086370.1.1 138 LVNIIVACAKADKKNYSCLADRLIRNIIRRfeVAQFGGAMKKVATHFADAFDNKIHR--------LIPQD-----IVGLSYNHTSVYGNCL 215
                         578899*******************99888789999*********************........22222.....2222223334689999 PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                         +lkf+h+taNq Ilea+++ +rvH+iDf+ +qGlQW aLlqaLa Rp+gpp +R+ g++ + ++   ++ l+e+g +La+fAe++gv+fef
  Solyc10g086370.1.1 216 FLKFAHFTANQSILEAFANFNRVHVIDFSFNQGLQWQALLQALALRPGGPPAFRLSGISGQPKSddGSDPLQEVGFKLAQFAESIGVEFEF 306
                         **********************************************************8754445899*********************** PP

                GRAS 179 nvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           ++a +l+dle ++L+++p  +Ea+aVn+v++l+ l++ ++++e+    v++l+k+++Pkvv+++eqe++hn+  F  r++ea +yys++
  Solyc10g086370.1.1 307 CGFMAYALADLEASMLNIRPsnEEAVAVNSVFELQPLFSIPGAIEK----VMDLIKQIEPKVVTITEQEVNHNGRVFSSRIIEASRYYSTM 393
                         ***999*************999****************77777777....***************************************** PP

                GRAS 268 fdsl.eaklpreseerikvErellg...reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353
                         fd l + +  + ++ ++++E+++l     ei n+vaceg++r+ r+ tl++W+ r+ +aGF+ vpl+++++kq  +ll+ ++  +gy+ve 
  Solyc10g086370.1.1 394 FDFLeNLESISPNNLDTVMEKQCLDvmvSEIYNLVACEGTKRIVRRGTLGQWQVRIYSAGFNLVPLTSDTYKQGAMLLASFPnAEGYKVEV 484
                         ****444445566899999*9986433389************************************************************* PP

                GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                         ++gsl+l W++ pL++ S Wr
  Solyc10g086370.1.1 485 KDGSLMLSWNSLPLIANSTWR 505
                         ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.361112484IPR005202Transcription factor GRAS
PfamPF035147.2E-94138505IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSSREISMDT IMEDEDSFVS NTNAIIYAAS DISGWTHSLF SDNNIPNSSS STSVDEHHQQ  60
ISTAAGDGGK EDDSMIVSSS ASSSWFNDNK QIDDHQEIRI FNVDFSSLCN NTCSGFESHG  120
GLLPDTGRTV NGDASVLLVN IIVACAKADK KNYSCLADRL IRNIIRRFEV AQFGGAMKKV  180
ATHFADAFDN KIHRLIPQDI VGLSYNHTSV YGNCLFLKFA HFTANQSILE AFANFNRVHV  240
IDFSFNQGLQ WQALLQALAL RPGGPPAFRL SGISGQPKSD DGSDPLQEVG FKLAQFAESI  300
GVEFEFCGFM AYALADLEAS MLNIRPSNEE AVAVNSVFEL QPLFSIPGAI EKVMDLIKQI  360
EPKVVTITEQ EVNHNGRVFS SRIIEASRYY STMFDFLENL ESISPNNLDT VMEKQCLDVM  420
VSEIYNLVAC EGTKRIVRRG TLGQWQVRIY SAGFNLVPLT SDTYKQGAML LASFPNAEGY  480
KVEVKDGSLM LSWNSLPLIA NSTWRLCSQV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4914550426378Protein SCARECROW
5b3h_A4e-4914550425377Protein SCARECROW
5b3h_D4e-4914550425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g086370.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331230.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-13b20 map 10, complete sequence
GenBankAC2402030.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249835.20.0DELLA protein GAI-like
TrEMBLA0A3Q7IN050.0A0A3Q7IN05_SOLLC; Uncharacterized protein
STRINGSolyc10g086370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Representative plantOGRP12511550
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-105GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]