PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g084220.1.1
Common NameLOC101249315
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 780aa    MW: 89452.3 Da    PI: 8.4024
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g084220.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.52.9e-2059134190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++              +rtgC a ++v++ ++gkw+++++++eHnH+l 
  Solyc10g084220.1.1  59 EFYNLYATKIGFRIRIGQLYRSRIDGSVVSRRFVCSKEGFQTT--------------SRTGCPAFIRVQRLDSGKWVLANIKKEHNHDLE 134
                         6***************************************976..............589***************************996 PP
2FAR164.72.5e-20214288189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +fY+++A ++GF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++++++g+w v+++++eHnHel
  Solyc10g084220.1.1 214 EFYHTHAANTGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQESGRWLVDRFQNEHNHEL 288
                         6**************************************9998..............4899***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1659134IPR004330FAR1 DNA binding domain
PfamPF031015.7E-16214288IPR004330FAR1 DNA binding domain
PfamPF105517.0E-27388479IPR018289MULE transposase domain
PROSITE profilePS5096610.534665701IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-8671698IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-8676703IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MSREEIVTTM TVRAKPVGGL AIATIVKNNG HHRDVEEEGE SRLEPNVGLE FDSAEDAQEF  60
YNLYATKIGF RIRIGQLYRS RIDGSVVSRR FVCSKEGFQT TSRTGCPAFI RVQRLDSGKW  120
VLANIKKEHN HDLEHPGEIC PSRIQRKIVT PTPTPKSKSA SIVVSTRTGL RSLDEDGPSG  180
ILDFKRLKRE KINGETRSEP YKGLEFVSAA EAYEFYHTHA ANTGFKVRIG QLFRSKNDGS  240
ITSRRFVCSK EGHQHPSRVG CGAFMRIQRQ ESGRWLVDRF QNEHNHELGA PIDASERVSS  300
KGFKEELSHG LENMDLVESN GGFSLVTRSR ESKIGSDWYN ELFDYFQARQ ADDMGFFYAV  360
EMHKGRAMSV LWADSRSRFS CTQFGDAIVF DTTYRRGSYS VPLASFIGVN HHRQPVLLGC  420
ALIAEESEES FTWLFQAWLR AMSGRRPISI VADQDWVIQH SIAQVFPGTH HRFSAWQVVA  480
KEQENIGALL SMNPEFKYEY ETSIFQSQTA NEFEAAWNVL INKYNLRENT WLKDMYRMRK  540
SWVPLYIKGT FFAGIPTDGS LKSYFGTLLT SQAPLSEFLI RYEKSLEQRR EEERKEDFNS  600
FNLQAVLHTK DPIEDQCRRL YTITMFKVFQ KELLECYSYV GIKINVEGAI SRYLVQKCGN  660
GDERHTVAFN ASNLNISCSC KMFEFEGVLC RHALKVFQIM NIRELPSRYI LHRWTKDAKY  720
GILRDVDSGG ASQDHKALML WSLREEAKNY IEAGTASLER YKLAFEIMQE GRRNLCWQN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g084220.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249494.10.0protein FAR1-RELATED SEQUENCE 12-like
RefseqXP_010312262.10.0protein FAR1-RELATED SEQUENCE 12-like
RefseqXP_019071660.10.0protein FAR1-RELATED SEQUENCE 12-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A3Q7JGE10.0A0A3Q7JGE1_SOLLC; Uncharacterized protein
STRINGSolyc10g084220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  3. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]