PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g080410.1.1

Common Name

LOC101260286

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 460aa MW: 52119.4 Da PI: 7.0479

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g080410.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	165	194	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR RKka++++Le+ Solyc10g080410.1.1 165 KTLRRLAQNREAARKSRIRKKAYVQQLETS 194 7789***********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-8	157	208	No hit	No description
SMART	SM00338	3.3E-6	161	221	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.4E-8	161	203	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.749	163	207	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.55E-7	165	204	No hit	No description
PROSITE pattern	PS00036	0	168	183	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-28	257	332	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MDSSNHQISF INQHQFFHDP RQQQQMENHK NHQISFGLSS ANPGNFINKE NNGGAYDLGE 60 LDQALFLYLD GQDPSSSSIQ DHRQNNYGMR PPTLNIFPSQ PMHIEPSSTK ANNNEQVSQA 120 TNGSKKSSQP SMDKSEPPKV TKGEGSRKVS TSSPEQDAPK TSDPKTLRRL AQNREAARKS 180 RIRKKAYVQQ LETSRIRLTQ LEHEIQRARS QGFHVGGNVL LGGDQGFQLI NRTNISSDAA 240 VFDLEYARWL EEHHRLICEL RNAVHEEQLQ EDELRIYVEN CVVHYDNIMN LKGMLAKSDV 300 FHLVSGLWKS PAERCFLWIG DFRPSEILKI IMCQIEALTE NQLLGMCGLQ KSTQEAEDAL 360 SQGLETLNQS LSDTIIASDA LILGNNNENM GNYMALAINQ LSTVEAFLRQ ADNLRHQTIH 420 RLHQILTTRQ AARCFIAIGD YFHRLRALSS LWLTRPRHE*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MDSSNHQISF INQHQFFHDP RQQQQMENHK NHQISFGLSS ANPGNFINKE NNGGAYDLGE  60
LDQALFLYLD GQDPSSSSIQ DHRQNNYGMR PPTLNIFPSQ PMHIEPSSTK ANNNEQVSQA  120
TNGSKKSSQP SMDKSEPPKV TKGEGSRKVS TSSPEQDAPK TSDPKTLRRL AQNREAARKS  180
RIRKKAYVQQ LETSRIRLTQ LEHEIQRARS QGFHVGGNVL LGGDQGFQLI NRTNISSDAA  240
VFDLEYARWL EEHHRLICEL RNAVHEEQLQ EDELRIYVEN CVVHYDNIMN LKGMLAKSDV  300
FHLVSGLWKS PAERCFLWIG DFRPSEILKI IMCQIEALTE NQLLGMCGLQ KSTQEAEDAL  360
SQGLETLNQS LSDTIIASDA LILGNNNENM GNYMALAINQ LSTVEAFLRQ ADNLRHQTIH  420
RLHQILTTRQ AARCFIAIGD YFHRLRALSS LWLTRPRHE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.7021	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269\|PubMed:12777042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269\|PubMed:12777042}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g080410.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244286	1e-154	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010312148.1	0.0	bZIP transcription factor TGA10-like
Swissprot	Q52MZ2	0.0	TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBL	M1C6K4	0.0	M1C6K4_SOLTU; Uncharacterized protein
STRING	Solyc10g080410.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2279	21	45
Representative plant	OGRP7516	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-178	bZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc10g080410.1.1
Entrez Gene	101260286

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]