PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g079380.1.1
Common NameLOC101254651
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 256aa    MW: 29916.9 Da    PI: 8.0031
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g079380.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34241152102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF+++ F+kg+k+
  Solyc10g079380.1.1  24 FLLKTYMLVEDPATDDVISWNSDGSAFIVRQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTNQ---------WEFSNDLFRKGDKD 105
                         9****************************************************************988.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+rkk 
  Solyc10g079380.1.1 106 LLCDIRRKKA 115
                         ********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3517108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.48E-3320113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5020113IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGELEDECER NLLEYVRKAS TPPFLLKTYM LVEDPATDDV ISWNSDGSAF IVRQPAEFAR  60
DLLPTLFKHS NFSSFVRQLN TYGFRKITTN QWEFSNDLFR KGDKDLLCDI RRKKARTNKQ  120
QPNKNIRKES EDEDQKSSSS TYNSSSSFEY NSLVDENKRL KMENGELSYE LSLVNKKCKD  180
LIDLVAILSK KSKEEEKKEG QKGKRPMLFG VRLEVEEEIE RKRKRVEFNE IASLFLSQTM  240
QIKIGKEDIY YRTIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A2e-21191132106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A2e-21191132106HEAT-SHOCK TRANSCRIPTION FACTOR
5d8k_B2e-21221133105Heat shock factor protein 2
5d8l_B2e-21221133105Heat shock factor protein 2
5d8l_D2e-21221133105Heat shock factor protein 2
5d8l_F2e-21221133105Heat shock factor protein 2
5d8l_H2e-21221133105Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g079380.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445990.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-35a7 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249739.10.0heat stress transcription factor B-3-like
SwissprotO222301e-62HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A3Q7IK600.0A0A3Q7IK60_SOLLC; Uncharacterized protein
STRINGSolyc10g079380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-55heat shock transcription factor B3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]