PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g079120.1.1
Common NameLOC101260490
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 704aa    MW: 76670.1 Da    PI: 6.8954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g079120.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07280300526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C++Gd C +aHg
  Solyc10g079120.1.1 280 PCPEFRK-GACRRGDMCEYAHG 300
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.3E-2011162IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.49E-1917139IPR020683Ankyrin repeat-containing domain
PfamPF127961.7E-1153128IPR020683Ankyrin repeat-containing domain
CDDcd002041.02E-1759137No hitNo description
PROSITE profilePS5029719.14759135IPR020683Ankyrin repeat-containing domain
SMARTSM002488.0E-45989IPR002110Ankyrin repeat
PRINTSPR014152.1E-56075IPR002110Ankyrin repeat
PROSITE profilePS5008813.0194129IPR002110Ankyrin repeat
SMARTSM002482.5E-494126IPR002110Ankyrin repeat
PRINTSPR014152.1E-5113127IPR002110Ankyrin repeat
SMARTSM003569.5E-6275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981280302IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4280300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035654310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MNMNHLTVET EDTLASLLEI ASNNDIDAFK RWIEHDLSSI NEVGMWYGRQ KGTRQMVLEH  60
RTPLMVAAMY GSIDVLKLIL SLAGVDVNRS CGRDNSTALH CAASGGSLNA VEAIKLLLEA  120
GADPNVKDAY GYRPLDVLVT SLKDHTIKSC LENLLKTDGM GDCNLRVSMA SSNSNSPPLS  180
PSLGNISPSS ASDTTSSPRS AKSTDLPVPS PPEKKEYPID PSLPDIKNSI YSTDEFRMFS  240
FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HMQEELRPLY MSTGSAVLSP RSNASAANAM  360
DFAAAMGLIP GSPSSVSVMS PSPFTPPMSP SANGVANMGW PPQNVPALHL PGSNLQSSRL  420
RSSLNARDIP AKDLTMLSDF DVQQQQLLNG LSCLSQSSTH ANSFNRSVRP KTLTPSNLED  480
LFSAEGSSPR FSDQALSQAV FSPTHKSAVF NQYLQQQKAM LSPINTSFSP RNVDNPILQG  540
SFGVPSSRSM SPRGMEPISP MSSRVSMLAQ GDKQHQFRSL SSRDLGSSAA SAIAGSPSDT  600
WSNWGIAPGK PDWAVNSEEF GRLRRSSSFE LANNGEEPDL SWVQSLVKES PQEAKNKSAS  660
RVSGLTDSGA DISEGSTSGS QIEQYDQLGA WMEQMKLDQL IAR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.62760.0cell culture| flower| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g079120.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154870.0Solanum lycopersicum chromosome 0 clone C00SLm0076E07, complete sequence
GenBankAC2442980.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence
GenBankAC2445880.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249196.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_004249197.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0V0IT350.0A0A0V0IT35_SOLCH; Putative zinc finger CCCH domain-containing protein 30-like
TrEMBLM1AEI80.0M1AEI8_SOLTU; Uncharacterized protein
STRINGSolyc10g079120.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]