PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g078990.1.1

Common Name

LOC104644361

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 233aa MW: 26559.6 Da PI: 7.7154

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g078990.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8.2e-06	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C +sF+++ L H++ H Solyc10g078990.1.1 82 YECHYCFRSFPTSQALGGHQNAH 104 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.0E-6	80	109	No hit	No description
Pfam	PF13912	3.0E-6	82	106	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.427	82	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEKIEREALD FMNVESSSQL PITLPVNEKP IRLFGKEFGG GDSINMTATN MSEFIENNPF 60 YDKPNIVKEN HIKKNVEIMR KYECHYCFRS FPTSQALGGH QNAHKKERKN AKRHDQPSIY 120 GITNRNRLGE ATVSTRTHYH STWTNINNNT PRFDGNGHNV NVISPINGNP LTFWQIPPAF 180 NQYISSSSDN NNNLVFSNDD LIRNPPMVNI SNNCEYKPKG EVQDHVSLDL HL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g078990.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244298	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010312073.1	1e-174	zinc finger protein 8-like
TrEMBL	K4D2E0	1e-172	K4D2E0_SOLLC; Uncharacterized protein
STRING	Solyc10g078990.1.1	1e-173	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1473	15	26
Representative plant	OGRP2859	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	1e-31	zinc finger protein 8

Link Out ? help Back to Top
Phytozome	Solyc10g078990.1.1
Entrez Gene	104644361

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]