PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g078970.1.1 | ||||||||
Common Name | LOC104644359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 23776.2 Da PI: 8.6616 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.6e-05 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C +sF+++ L H++ H Solyc10g078970.1.1 79 YECYYCFRSFPTSQALGGHQNAH 101 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.47E-6 | 77 | 106 | No hit | No description |
Pfam | PF13912 | 1.6E-5 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.24 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEKIGREAVD YMNMKSFSQP LRKKSIRLFG KEFSVGDSTN MSESTDKNPL HHEPKPNTMS 60 ISANRIDKTG HVDEISRKYE CYYCFRSFPT SQALGGHQNA HKKERQNAKL SHLQSSIVHE 120 TNRNRFGEPS TAATRLTHYH STWSNINNNN VYSPNYNEAF WQIPPTIHHY QNNINPPSSF 180 SHDSFFPNDE EKREVQNHVS LDLHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g078970.1.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244593 | 1e-145 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44a10 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010312072.1 | 1e-154 | zinc finger protein 8-like | ||||
TrEMBL | K4D2D8 | 1e-153 | K4D2D8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g078970.1.1 | 1e-153 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1473 | 15 | 26 | Representative plant | OGRP2859 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41940.1 | 5e-20 | zinc finger protein 8 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g078970.1.1 |
Entrez Gene | 104644359 |
Publications ? help Back to Top | |||
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