PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g078670.1.1

Common Name

LOC101250172

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 488aa MW: 55515.1 Da PI: 6.742

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g078670.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	8.9e-10	195	234	5	41
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR RKka+i++Le + ++Le+e Solyc10g078670.1.1 195 KTLRRLAQNREAARKSRIRKKAYIQQLESsriRLAQLEQE 234 788************************9633355555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-7	188	238	No hit	No description
SMART	SM00338	3.4E-10	191	269	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.5E-7	192	237	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.151	193	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-7	195	238	No hit	No description
CDD	cd14708	8.17E-21	195	247	No hit	No description
PROSITE pattern	PS00036	0	198	213	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.0E-29	285	359	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MGLQSHENQI TFGNHDHQFH QQQQQTQHQH QHQQLLFQNN SDQRSNADQI SFGMLHQSSS 60 VIPENFINKE SSSTGGYDLG ELDDQALFLY LDAQDPSSNH DQIQNNSEMM RPPTLNIFPS 120 QPMHVEPSST KGNTGFVSSG SEKSSEPSIM ELSKSKNNVL STSSGPEPKI PKREWNRKGQ 180 NSGSEQNAPK TTDHKTLRRL AQNREAARKS RIRKKAYIQQ LESSRIRLAQ LEQELQRARS 240 QGFHFAGTLL GGDQGLPNNI ANMTSEAAAF DMEYSRWLEE HHRLMCELRN AVTEHFPEND 300 LRIYVENCVT HYDEMMNLKS ILLKTDVFHL ISGMWRTPAE RCFIWMGDFR PSELIKIILS 360 QIEPLTEQQF VGICGLQQST QEAEEALSQG LENLNQSVSD TIVSDALLAN CPQNMANYMG 420 QMAIAINKLS TIEGFVRQAD NLRHQTIHRL HQILTSRQAA RCFLAIAEYF HRLRALSSLW 480 VARPRHE*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MGLQSHENQI TFGNHDHQFH QQQQQTQHQH QHQQLLFQNN SDQRSNADQI SFGMLHQSSS  60
VIPENFINKE SSSTGGYDLG ELDDQALFLY LDAQDPSSNH DQIQNNSEMM RPPTLNIFPS  120
QPMHVEPSST KGNTGFVSSG SEKSSEPSIM ELSKSKNNVL STSSGPEPKI PKREWNRKGQ  180
NSGSEQNAPK TTDHKTLRRL AQNREAARKS RIRKKAYIQQ LESSRIRLAQ LEQELQRARS  240
QGFHFAGTLL GGDQGLPNNI ANMTSEAAAF DMEYSRWLEE HHRLMCELRN AVTEHFPEND  300
LRIYVENCVT HYDEMMNLKS ILLKTDVFHL ISGMWRTPAE RCFIWMGDFR PSELIKIILS  360
QIEPLTEQQF VGICGLQQST QEAEEALSQG LENLNQSVSD TIVSDALLAN CPQNMANYMG  420
QMAIAINKLS TIEGFVRQAD NLRHQTIHRL HQILTSRQAA RCFLAIAEYF HRLRALSSLW  480
VARPRHE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.17872	0.0	fruit\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269\|PubMed:12777042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269\|PubMed:12777042}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g078670.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249162.1	0.0	bZIP transcription factor TGA10-like
Swissprot	Q52MZ2	0.0	TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBL	A0A3Q7IKI1	0.0	A0A3Q7IKI1_SOLLC; Uncharacterized protein
STRING	Solyc10g078670.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2279	21	45
Representative plant	OGRP7516	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-180	bZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc10g078670.1.1
Entrez Gene	101250172

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]