PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g076370.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 406aa    MW: 46682.9 Da    PI: 4.3739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g076370.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-1867125155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr+ +++ g  k+  kr +lg++ ta +Aa a+++a+k ++g
  Solyc10g076370.1.1  67 CKYRGVRQRT-WGKWVAEIREpVYISGqyKSkgKRLWLGTYSTAGDAAVAYDEAAKVMYG 125
                         79*****999.**********666677794456***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-2967135No hitNo description
PfamPF008475.0E-1167125IPR001471AP2/ERF domain
PROSITE profilePS5103222.35268133IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1968134IPR016177DNA-binding domain
SMARTSM003806.9E-3568139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2868135IPR001471AP2/ERF domain
PRINTSPR003677.8E-96980IPR001471AP2/ERF domain
PRINTSPR003677.8E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDFYDNRKVK RRRNGSDSIE EILLRWKNFN QEVNWNHEQV KKKRKSPGNG SNKGCMPGKG  60
GPENSGCKYR GVRQRTWGKW VAEIREPVYI SGQYKSKGKR LWLGTYSTAG DAAVAYDEAA  120
KVMYGSNAIL NFPNSSNGNI TRTSSGQSSI DHEESVVDDE KKTEIESDLK DDDGGVVVNM  180
DLSYDYANHG SPACSWTEEE LEVITEENSE IELTNLECDS RFFHKSHVKV ERPIMEEEID  240
EDEFVHNDVS NTIDVEPTVM FSKDDFSRLD ETRNSNDQIV LQDMDFRSSE NLNEDVSTRL  300
EYMEHFLMDD NCSMEAANIS DIICLTENHD EAFDFQRFLE ESFDFELNYA KNEEQFDCTY  360
AYNQQIDHQN SETNFEIRSD GIRKEKNLHG FGLDDFGASN NQRKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1969133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512NRKVKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.243760.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g076370.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5000115e-07Lycopersicon esculentum dehydration responsive element binding protein (DREB1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010327719.10.0dehydration-responsive element-binding protein 2A
TrEMBLA0A3Q7IJR00.0A0A3Q7IJR0_SOLLC; Uncharacterized protein
STRINGSolyc10g076370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-32ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]