PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g055550.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 305aa MW: 33483 Da PI: 7.7922 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.3 | 5.8e-07 | 129 | 172 | 7 | 50 |
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r +N+eA r++ ++Kka+++ Lee+v L N++L ++l+ Solyc10g055550.1.1 129 KKRSLSNKEAVRKYCEKKKARVASLEEEVVRLRDINQQLLNRLQ 172 5899***********************************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.002 | 126 | 190 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.0E-8 | 129 | 172 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.3E-10 | 129 | 191 | No hit | No description |
CDD | cd14686 | 4.19E-8 | 129 | 182 | No hit | No description |
SuperFamily | SSF57959 | 3.94E-5 | 130 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MLLLFLLFVY LTYSSLIDWI AKYHLNSSLL NACCLPAGSI STMDDMELEF SSQQVLSSST 60 FGEIPESSPM NKRFNEILTD VHACIHAHTC NPPGPDNSHT HTCYHVHTKV VTPPRDDTTA 120 ESTAANVGKK RSLSNKEAVR KYCEKKKARV ASLEEEVVRL RDINQQLLNR LQGQAVLEAE 180 VSRLKCLLVD IRGRIAGEIG SFPYHKPMEG ADVYQNLRGT YVMNPCNLQC DDQVYCLQPN 240 SEESNGQGLN SCGFETLQCS SSQGLKEVPG CALGFGTPTA NASRGNKKKR TGGKRAHNGK 300 PVNC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g055550.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244309 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-25k20 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010327411.1 | 0.0 | basic leucine zipper 23-like | ||||
Swissprot | Q8GTS2 | 2e-89 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A3Q7IIJ6 | 0.0 | A0A3Q7IIJ6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g055550.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2989 | 24 | 52 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 5e-90 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g055550.1.1 |
Publications ? help Back to Top | |||
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