PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc10g054070.1.1 | ||||||||
Common Name | LOC101255342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 188aa MW: 21404.2 Da PI: 8.9206 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 167.5 | 7.1e-52 | 14 | 145 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 s++++C+dCGnqakkdC + RCRtCCk+rg++C+thvkstW+p++ rr+r+++ +++ ++ ++kr+r + al +t Solyc10g054070.1.1 14 SNNKRCEDCGNQAKKDCLYFRCRTCCKTRGYQCQTHVKSTWIPISTRRSRHHHPSSTV-------QQPNPKRHRPN-----HALLQTG--- 89 56789********************************************966655543.......33345555543.....3333333... PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 e e+++lP+evs +a+frcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG + Solyc10g054070.1.1 90 -G---EEEKEELPSEVSLPAIFRCVRVSSVDNMVDQYAYQTSVNIAGHVFKGILYDQGNN 145 .2...345678***********************************************75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-52 | 17 | 145 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.3E-26 | 19 | 60 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.0E-25 | 97 | 143 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MMMREDEGIV ISSSNNKRCE DCGNQAKKDC LYFRCRTCCK TRGYQCQTHV KSTWIPISTR 60 RSRHHHPSST VQQPNPKRHR PNHALLQTGG EEEKEELPSE VSLPAIFRCV RVSSVDNMVD 120 QYAYQTSVNI AGHVFKGILY DQGNNMPNQT SSRGFHQQQL TNFTPPISTT YPTFMPGMQL 180 FQYPKSS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc10g054070.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC245809 | 1e-169 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-60l14 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248882.1 | 1e-141 | protein SHI RELATED SEQUENCE 3-like isoform X2 | ||||
Swissprot | Q9LQZ5 | 4e-44 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | K4D105 | 1e-140 | K4D105_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g054070.1.1 | 1e-140 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 | Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G21400.1 | 3e-35 | SHI-related sequence3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc10g054070.1.1 |
Entrez Gene | 101255342 |
Publications ? help Back to Top | |||
---|---|---|---|
|