PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g054010.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 164aa MW: 18702.9 Da PI: 4.9973 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1e-10 | 36 | 78 | 5 | 47 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++ +r+++NRe+A rsR RK++ ++ L +L +eN + Solyc10g054010.1.1 36 RKRKRMISNRESAWRSRMRKQKHLDDLMSQLSNLMKENNEILT 78 6789**********************************86554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-14 | 32 | 96 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.726 | 34 | 97 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.1E-10 | 36 | 108 | No hit | No description |
Pfam | PF00170 | 2.0E-8 | 36 | 77 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.04E-12 | 36 | 88 | No hit | No description |
CDD | cd14702 | 3.30E-15 | 37 | 87 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 39 | 54 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MASSSGTSSG SGSGSGSYTL LNSGSEEDLQ QLMDERKRKR MISNRESAWR SRMRKQKHLD 60 DLMSQLSNLM KENNEILTNM SVTTQNYLNI EAENSILRAQ VSELKQRFES LTKITSVLSY 120 NGNINEISND QIFHESYLVD ALIQNEFWND MYHPIMTADI MQY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 56 | RKRKRMISNRESAWRSRMRKQK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14277 | 1e-133 | flower| leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 4387934 | 1e-133 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g054010.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019225641.1 | 1e-60 | PREDICTED: bZIP transcription factor 11-like | ||||
TrEMBL | A0A3Q7II01 | 1e-115 | A0A3Q7II01_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g054010.1.1 | 1e-116 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA537 | 24 | 123 | Representative plant | OGRP551 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 1e-35 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g054010.1.1 |
Publications ? help Back to Top | |||
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