PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g049780.1.1
Common NameLOC104649658
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 273aa    MW: 30383.1 Da    PI: 4.9035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g049780.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29e-111972371055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR++iN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Solyc10g049780.1.1 197 RKRREKINQRLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 237
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-14186253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-12191246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-11196241No hitNo description
PfamPF000104.5E-8197237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEPVFEDEWS GMCSTDQEAD FMAQLLWQPN NIDNMYFSSY NGCNSSQISF PSLESYYQSH  60
VQSILTRNGS SITKENGMVE GENTSSPSQV LATYNPIEAD DFLNQDVSME SGENTAKVLD  120
SPPESSKKKR LCNLLGDVPK NKRSVNLKKA SEMDGKNKAA LQRQNSISCC SEDESINVPK  180
SRASRGSATD SQSLYARKRR EKINQRLRIL QSLVPNGTKV DISTMLEEAV QYVKFLQLQI  240
KLLSSDDLWM YAPIAYNGMD IGLDLKIGTP KS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g049780.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055483.10.0transcription factor bHLH84-like
TrEMBLK4D0D50.0K4D0D5_SOLLC; Uncharacterized protein
STRINGSolyc10g049780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-55bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]