PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g044680.1.1
Common NameLOC101249128
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 399aa    MW: 44993.4 Da    PI: 8.6212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g044680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W +eEde+l++ v+++G g+W+++++   + R++k+c++rw +yl
  Solyc10g044680.1.1 13 KGLWCPEEDEKLINHVTKYGHGCWSSVPKLAALQRCGKSCRLRWINYL 60
                        57799*****************************************97 PP
2Myb_DNA-binding44.53.5e-1466108145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg ++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k+ w+
  Solyc10g044680.1.1  66 RGTFSQQEENLIIQLHSLLGNK-WSQIASRLP-GRTDNEIKNLWN 108
                         899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-27463IPR009057Homeodomain-like
PROSITE profilePS5129417.455860IPR017930Myb domain
SuperFamilySSF466891.65E-2811107IPR009057Homeodomain-like
SMARTSM007171.7E-101262IPR001005SANT/Myb domain
PfamPF002495.5E-131360IPR001005SANT/Myb domain
CDDcd001671.11E-91660No hitNo description
PROSITE profilePS5129424.05361115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2464115IPR009057Homeodomain-like
SMARTSM007176.7E-1365113IPR001005SANT/Myb domain
PfamPF002492.5E-1366108IPR001005SANT/Myb domain
CDDcd001677.00E-968108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGRPCCYKKK LRKGLWCPEE DEKLINHVTK YGHGCWSSVP KLAALQRCGK SCRLRWINYL  60
RPDLKRGTFS QQEENLIIQL HSLLGNKWSQ IASRLPGRTD NEIKNLWNSS IKKKLRQKGI  120
DPNTHKLLSV IENEEKVSAI SMNIEKVSEG SSELNIIEDS NYRIKSKSSL VTMTMDNYPS  180
NTTTSAAPLT HKFFLERFVT THETSTASCN KPLDQLTSYL SFEKLNYGSN IGLSINSNTN  240
NLLLNSKNSE MFTHQVNSSI TNDNILTSPI AAIASNDSMR NGSSTSIELQ RNSSFFDSNA  300
FSWGTADYDK SEKEVNIHPS VPDPDDIKWS EYLHTQLLPG NAITNDQITQ DLYSAKSSIQ  360
FTTQGSLLQN QQQQPSLQTA NIYNKHYQRI SDSFGQFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-281011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g044680.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445710.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-36f8 map 10, complete sequence
GenBankAC2455710.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-19l5 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248973.10.0transcription factor MYB61-like
TrEMBLA0A3Q7IE600.0A0A3Q7IE60_SOLLC; Uncharacterized protein
STRINGSolyc10g044680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-80myb domain protein 61
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]