PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g009270.2.1
Common NameLOC101267939
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 394aa    MW: 45112 Da    PI: 6.2319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g009270.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.1e-14215260454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++Ns+f  Lre++P+      +K++Ka+ L  Av YI +L
  Solyc10g009270.2.1 215 NHVEAERQRREKLNSRFYALREVVPNV-----TKMDKATLLSDAVTYITQL 260
                         799***********************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-81557IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142154.9E-2962154IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.28E-15203264No hitNo description
PROSITE profilePS5088816.869211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11215260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17215272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-18215282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDEPIFSPSS SQSSLQHRLQ YIVKNQTNYC SDWAYIIFWQ SSNNRSCLTW GDGHLNMKIT  60
NNKDVEWFYL MSLAQSFCVG EGVVGKCFSS GSLVWLAGDQ QFEFCHCERA KEAHYVHGIN  120
TFVCIPISSG VLELGSSTMI KQDLNLVQQV KSMFFGYETI DQFDDFGLFN CLELYGEEAK  180
KGEVVVGTTP HENKAGLKNK TSKKRRREIC ETQGNHVEAE RQRREKLNSR FYALREVVPN  240
VTKMDKATLL SDAVTYITQL KAKVDELESK LHSNNYHYYY PEMKIKHKME NHDINVVDNQ  300
SSITTSRDHT MEIEVKMVGQ DAMIRVQSEN VNYPSTRLMC ALQEVELHVY HANISSVNDF  360
MLHDIVVKVP QGLETEDEVK YALLRSLDQQ TCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-2281542192Transcription factor MYC3
4rqw_B7e-2281542192Transcription factor MYC3
4rs9_A7e-2281542192Transcription factor MYC3
4yz6_A7e-2281542192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g009270.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248095.10.0transcription factor MYC2-like
TrEMBLA0A3Q7ICX20.0A0A3Q7ICX2_SOLLC; Uncharacterized protein
STRINGSolyc10g009270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-75bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]