PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g008270.2.1
Common NameLOC101265482
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 236aa    MW: 26917.9 Da    PI: 7.688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g008270.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-071665654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        + +E++RR+++++  ++L ++lP+ +s  + + ++  +    Av++I  L
  Solyc10g008270.2.1 16 KYVEKNRRNHMKNLCNQLHSMLPThSSTSKETTMTVPDQIDAAVKHIETL 65
                        568*********************65566666699999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.8581065IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-91383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-91585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-41765IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-51870No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MERHLKSKLA PKLERKYVEK NRRNHMKNLC NQLHSMLPTH SSTSKETTMT VPDQIDAAVK  60
HIETLKMNLE KNKKHLEELK MGPNKAQSLN QTNEPGPITK SPPQIEFHEM GPNMVVVLIN  120
SLDNIATFNN IIRLCHKEGV EVVSTSFKLN GNSTLQISHE PKVQINKSSP MEFKATSLCD  180
KMKELIYGPS CNNDIESNQH LWDYIIESGL IEFNTIELPP IENHMKNIYE TPSFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g008270.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248173.11e-173transcription factor bHLH162-like
TrEMBLA0A3Q7IC801e-172A0A3Q7IC80_SOLLC; Uncharacterized protein
STRINGSolyc10g008270.2.11e-172(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-11bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]