PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g008250.1.1 | ||||||||
Common Name | LOC101259680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26446.1 Da PI: 8.2066 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.5e-05 | 19 | 64 | 6 | 52 |
HHHHHHHHHHHHHHHHHHHCTSCCC...............TTS-STCHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas............kapskKlsKaeiLekAveYIk 52 + +E++RR+ +++ ++L +l+P+ A++YIk Solyc10g008250.1.1 19 KDVEKNRRNYMKNLCNQLYSLIPSTHhsretmglqdkiD-------------AAIKYIK 64 689*********************533444444444330.............4444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.28E-6 | 15 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-6 | 18 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEGCQRSSSA PAGVKLERKD VEKNRRNYMK NLCNQLYSLI PSTHHSRETM GLQDKIDAAI 60 KYIKSSEMKL EKKKIHLEKL SRLSGRKRPK SSNSTNGPSP STGLSSSPQI QFHEMGPNMV 120 VVLISGLDNI ATFNNIIRLC HDEGVEVVYA NFTLNGNSML QISHETKINM SSTMECRAAN 180 LCDKLKELLH GKSYDNELES QLYLWDYIVE SELLKFYDVE FLPSTSQNSN MYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 89 | RLSGRKRPK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g008250.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248474.1 | 1e-174 | uncharacterized protein LOC101259680 | ||||
TrEMBL | A0A3Q7IB92 | 1e-172 | A0A3Q7IB92_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g008250.1.1 | 1e-173 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5297 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 7e-09 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g008250.1.1 |
Entrez Gene | 101259680 |
Publications ? help Back to Top | |||
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