PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g075640.2.1

Common Name

LOC101261361

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 758aa MW: 86881.1 Da PI: 7.0284

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g075640.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.9	4.7e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY++++k++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnH Solyc09g075640.2.1 59 EFYCSFGKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSDDGKLQRNRKSSRCGCQAFMRIVKRAdhnVPEWRITGFSNVHNH 149 6*************999887455667****************9***************99888555568********** PP FAR1 88 ela 90 el Solyc09g075640.2.1 150 ELL 152 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-21	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.175	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.7E-8	559	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MPEITNIAKE TFENGTDSSQ DDTGTVEEMP EDTILQRQTS VNLIPFIGQR FVSQDAAYEF 60 YCSFGKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSDDGKL QRNRKSSRCG 120 CQAFMRIVKR ADHNVPEWRI TGFSNVHNHE LLKSTEMQLI PAYCTMSPDD KSRICMFVKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEVDVR HFLQSFRNVD QDNDPIDLLK MCKEMKDKDL 240 KFKYDYKIDC NNRLEHIAWS YASSMRLYEY FGDAIVFDTT HRLDAYDMLL GIWIGVDNHG 300 SHCFFGCILL RDENMRSFSW ALKTFLGFMN GKTPATMLTD QNLWLKEAIA TEMPRVKHAF 360 CIWNITSRFS EWFSTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMIET YQLDGNKHIA 420 SLYALRSYWA LPFLRSFFFA GMTSTFQSET INTFIQRFLS AQSILGNFVE QVVRVVDAKD 480 QAGAKHKVQR IVQKVPLKTG SPIESHAANV LTPFAFSKLQ EELVFAPQYA SLMVDESYFV 540 VRHHKEMGRG YKVLWIPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDRYLPMRW 600 REFTSSVAKP TLLSLPSDHL GKVQLLQSMI STLINESVET EERLNVVCDE VSTVLSRIKG 660 LPTASNSGNA IAYESPSNSL ILAEVEDSEG IGQSFTCSPH ECINLAKLKE RGSRDGLDFY 720 GKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDRLGFL*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MPEITNIAKE TFENGTDSSQ DDTGTVEEMP EDTILQRQTS VNLIPFIGQR FVSQDAAYEF  60
YCSFGKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSDDGKL QRNRKSSRCG  120
CQAFMRIVKR ADHNVPEWRI TGFSNVHNHE LLKSTEMQLI PAYCTMSPDD KSRICMFVKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEVDVR HFLQSFRNVD QDNDPIDLLK MCKEMKDKDL  240
KFKYDYKIDC NNRLEHIAWS YASSMRLYEY FGDAIVFDTT HRLDAYDMLL GIWIGVDNHG  300
SHCFFGCILL RDENMRSFSW ALKTFLGFMN GKTPATMLTD QNLWLKEAIA TEMPRVKHAF  360
CIWNITSRFS EWFSTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMIET YQLDGNKHIA  420
SLYALRSYWA LPFLRSFFFA GMTSTFQSET INTFIQRFLS AQSILGNFVE QVVRVVDAKD  480
QAGAKHKVQR IVQKVPLKTG SPIESHAANV LTPFAFSKLQ EELVFAPQYA SLMVDESYFV  540
VRHHKEMGRG YKVLWIPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDRYLPMRW  600
REFTSSVAKP TLLSLPSDHL GKVQLLQSMI STLINESVET EERLNVVCDE VSTVLSRIKG  660
LPTASNSGNA IAYESPSNSL ILAEVEDSEG IGQSFTCSPH ECINLAKLKE RGSRDGLDFY  720
GKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDRLGFL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.14057	0.0	flower\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g075640.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247382.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_010326560.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_025888546.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A3Q7I771	0.0	A0A3Q7I771_SOLLC; Uncharacterized protein
STRING	Solyc09g075640.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13535	14	16
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Solyc09g075640.2.1
Entrez Gene	101261361

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]