PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g011120.1.1
Common NameLOC101261848
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 277aa    MW: 31666.2 Da    PI: 7.9442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g011120.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145274123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Solyc09g011120.1.1 52 YTCSFCRREFRSAQALGGHMNVH 74
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-64979No hitNo description
SMARTSM003550.00615274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEQTRYWMST KRKHDMTLSN NPSSYGDSWE EQAFAEDAAG ALGGCIWPPR SYTCSFCRRE  60
FRSAQALGGH MNVHRRDRAR MKQSPPSNSP SVHDHQVFIP PTPPLHSNHH HNSHVQYPSQ  120
ICNTFMYNPN SDSASGVPIR VSSQKTLETH HHSSLSSIVH EEKKNSLSSS WSNLVADKYS  180
CLSSVKNDEE KKMKSIDFKK DQERNLEVMI DSSFRAKHDH IVEPNYKRRK VDQEDNISFA  240
NLFPRTSSSI ERCRPQSEAL ERIPSAIEEL DLELKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134774229superman protein
2l1o_A2e-134774229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g011120.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071045.10.0zinc finger protein 10
SwissprotO809422e-26ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A3Q7I0170.0A0A3Q7I017_SOLLC; Uncharacterized protein
STRINGSolyc09g011120.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-27zinc-finger protein 10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]