PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g010160.1.1 | ||||||||
Common Name | LOC101257801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 28944.4 Da PI: 8.9819 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.4 | 2.2e-43 | 18 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp G+rF Pt+eelv +yL++k++gk+ ++++vi+ v+iy+++P++Lp+ +k+++++w+fF++ + ++a+g r++r t++gyWkatg Solyc09g010160.1.1 18 LPTGYRFYPTEEELVEFYLRNKLDGKRDDIQRVIPVVNIYHHNPSELPEmageVIKHDTEQWFFFIPIQDREARGGRPTRLTTQGYWKATG 108 699***************************99***************9546766666788******************************* PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s+ +++ +g+k+t+vfykgrap+g+kt+W m+ey++ Solyc09g010160.1.1 109 TPGFVYSSnNNRIIGCKRTMVFYKGRAPNGKKTQWKMNEYKA 150 ******9867778***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-48 | 6 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.567 | 18 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-22 | 19 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MENNVYDNYN HNNNNNVLPT GYRFYPTEEE LVEFYLRNKL DGKRDDIQRV IPVVNIYHHN 60 PSELPEMAGE VIKHDTEQWF FFIPIQDREA RGGRPTRLTT QGYWKATGTP GFVYSSNNNR 120 IIGCKRTMVF YKGRAPNGKK TQWKMNEYKA TTHGQPSLIT NNHITNLKLQ HEFSLCRVYK 180 KSKCVRAFDR RPAGSGLLLP PHQPLINNNN NNNNNIGTSS SSTGIIQPME NYNDLSETPL 240 WDFEDWNFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-28 | 18 | 182 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g010160.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217004 | 3e-07 | Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246880.2 | 0.0 | NAC domain-containing protein 90-like isoform X1 | ||||
Swissprot | Q9FMR3 | 6e-71 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2G2YPI7 | 1e-130 | A0A2G2YPI7_CAPAN; NAC domain-containing protein 90 | ||||
STRING | Solyc09g010160.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-71 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g010160.1.1 |
Entrez Gene | 101257801 |
Publications ? help Back to Top | |||
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