PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g009100.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 510aa    MW: 56098.5 Da    PI: 4.5503
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g009100.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.91.2e-31951902103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT...TEEE---SSBTTTTXTTSEEEEESXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY...gFkkvkdeekkskskekiweFkhksFkkg 89 
                         Fl+k+++++ed+ l+++isw +ng+sfvv+d+ ef++ vLp+ Fkhsnf+SFvRQLn+Y   gF+k++ ++         weF+++ F++g
  Solyc09g009100.2.1  95 FLSKTFDLVEDPLLDTIISWGRNGESFVVWDPVEFSRLVLPRNFKHSNFSSFVRQLNTYvdkGFRKIDADR---------WEFANEGFSRG 176
                         9**********************************************************888899998888.........*********** PP

                         XXXXXXXXXXXXXX CS
        HSF_DNA-bind  90 kkellekikrkkse 103
                         k++ll++i+r++s+
  Solyc09g009100.2.1 177 KRHLLKNIQRRRSH 190
                         ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.98E-3290187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-5291187IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.4E-3491187IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-2895187IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1195118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-11133145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-11146158IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MNPFDKKQES DTDTKTPFLT EMDSEFAAFS PISLPFADPS SPFINFGSFA TPLSQHPVGE  60
GEGEGEGGEI EQPAEGGLGV PQPMECLHGI QIPPFLSKTF DLVEDPLLDT IISWGRNGES  120
FVVWDPVEFS RLVLPRNFKH SNFSSFVRQL NTYVDKGFRK IDADRWEFAN EGFSRGKRHL  180
LKNIQRRRSH QGGSSSGSSA EAGKGTMDEI EKLRNEKSLM MQEVVELQQQ QRGTVQQMES  240
VNEKLQAAEQ RQKQMVSFLA KVLQNPTFLA RVRQMKEQGE ITSPRTMRKF VKHQSHGPDG  300
VGSSSMEGQI VKFRSDFQDL AGCFDSPDFN TVVDQQLPEI GLGAEAMPFE GVPVADELTV  360
AHELLNCSDR EIRGASFFNS EGSQFKGKNV ASPQIEVMPE YFASFPEEMG KEKNVSGFST  420
PAIGSMVKDE ELWGMGFEAS AGMPSTGAEL WDSRSSYVPD FGVSSGLSDL WDIDPLQVAG  480
SSGVDKWPAD GSPFGQSGSH ANQPKNDSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-209218726129Heat shock factor protein 1
5d5v_B7e-209218726129Heat shock factor protein 1
5d5v_D7e-209218726129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.28760.0callus| flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g009100.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1203600.0Solanum lycopersicum heat stress transcription factor A3 (HSFA3) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234854.10.0heat stress transcription factor A3
RefseqXP_019070985.10.0heat stress transcription factor A3 isoform X1
TrEMBLD1M7W90.0D1M7W9_SOLLC; Heat stress transcription factor A3
STRINGSolyc09g009100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Representative plantOGRP10024911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.17e-77heat shock transcription factor A3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]