PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc08g082110.2.1 | ||||||||
Common Name | LOC101261141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 340aa MW: 38573.7 Da PI: 5.3966 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.6e-30 | 118 | 178 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs++dp ++eitY+g+H+++ Solyc08g082110.2.1 118 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGTHTCN 178 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-28 | 108 | 179 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.494 | 112 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-26 | 116 | 179 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-41 | 117 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-27 | 118 | 177 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MDCGFNYEYN SLINELTQGL EHVKQLRASN KIQELDFHLQ MILSSFEKSL SILNWSTSGL 60 ATQTPLLVAP PESSISVDEN PKSDDQDFIY VSKKRKQMPT WSEQVRVSSE NGYEGPTDDG 120 YSWRKYGQKD ILGAKYPRSY YRCTYRLMQN CWATKQVQRS DDDPALFEIT YKGTHTCNQT 180 YNCAAATQPK SPQKHKHKKQ ANNSRTTPSN QMLANLQANL RVNTDDLDKK EATCSFPFSP 240 TFSGFVDENL HFQMSQVDDS LVGGYSPSFV SPTTPESSYF SLPTCQMNDS RRMYNAYHSE 300 SDLPDLFSAN TSSTSSPIIG LEFPLEHVEL DPNFSDFFR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 118 | 177 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.8258 | 0.0 | callus| flower| leaf| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc08g082110.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP009295 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245530.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A3Q7HUS3 | 0.0 | A0A3Q7HUS3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g082110.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1843 | 24 | 67 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-59 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc08g082110.2.1 |
Entrez Gene | 101261141 |
Publications ? help Back to Top | |||
---|---|---|---|
|