PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g080150.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 371aa MW: 39739.5 Da PI: 7.3264

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g080150.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.9	2.5e-36	70	175	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+qa+++i+e+tgt++ +a ++ +++ + +s++ s+ + Solyc08g080150.1.1 70 PPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEQAEQSIIEATGTGTVPAIAVsVNGTLKIPTSSPASNPEI 160 789*************************************************************888875443333333333333333333 PP TCP 92 ksaakskksqksaasal 108 +++++k+++ks++ + Solyc08g080150.1.1 161 DENHPQKRRRKSSN--S 175 33333333333333..2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.3E-30	75	171	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.01	76	130	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MSSFHDPDDD CGTSELSNGA AGDLNDQKMD GHAVADDKKL VFSAMKEEPF DSDHHTLVPS 60 MPMPVATAAP PRRSSTKDRH TKVEGRGRRI RIPATCAARI FQLTRELGHK SDGETVRWLL 120 EQAEQSIIEA TGTGTVPAIA VSVNGTLKIP TSSPASNPEI DENHPQKRRR KSSNSEFIDV 180 GSLNRNAANV SQFAPVTTTP ATITTAPPPG FVPVWGMSNG GMMVPSNAIW MIPATVPPAQ 240 VNVTNNNNVV LQYPQLWTPV FNLATRPIPS FVTAATINTN GPPAIMIAGP LSVNNGAATT 300 TGPKIGSNKS SMAPASLSSS TDKNNNNTND VKPHMLRDFS LEIYDRKELQ LMSRSGNHQQ 360 ETQVTSSERS *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MSSFHDPDDD CGTSELSNGA AGDLNDQKMD GHAVADDKKL VFSAMKEEPF DSDHHTLVPS  60
MPMPVATAAP PRRSSTKDRH TKVEGRGRRI RIPATCAARI FQLTRELGHK SDGETVRWLL  120
EQAEQSIIEA TGTGTVPAIA VSVNGTLKIP TSSPASNPEI DENHPQKRRR KSSNSEFIDV  180
GSLNRNAANV SQFAPVTTTP ATITTAPPPG FVPVWGMSNG GMMVPSNAIW MIPATVPPAQ  240
VNVTNNNNVV LQYPQLWTPV FNLATRPIPS FVTAATINTN GPPAIMIAGP LSVNNGAATT  300
TGPKIGSNKS SMAPASLSSS TDKNNNNTND VKPHMLRDFS LEIYDRKELQ LMSRSGNHQQ  360
ETQVTSSERS *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00316	DAP	Transfer from AT2G45680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g080150.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Interaction ? help Back to Top
Source	Intact With
BioGRID	Solyc06g065190.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ496338	0.0	Solanum lycopersicum TCP transcription factor 20 (TCP20) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233956.2	0.0	TCP transcription factor 20
TrEMBL	A0A3Q7HTQ8	0.0	A0A3Q7HTQ8_SOLLC; Uncharacterized protein
STRING	Solyc08g080150.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13731	11	12
Representative plant	OGRP3178	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-58	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc08g080150.1.1
Entrez Gene	100736547

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607]