PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g076330.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 71aa MW: 8220.45 Da PI: 9.6788

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g076330.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.9	2.8e-12	19	64	1	46
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 kfY +YA++ Fsvrk++ ++s+++++i+ ++fvCskeg+r ++ + Solyc08g076330.1.1 19 KFYLDYAHRNSFSVRKNRISRSRKDKSIIGQEFVCSKEGFRLKKCN 64 6***************************************988754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-10	19	63	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MNAVPYIVME FQSLDTGFKF YLDYAHRNSF SVRKNRISRS RKDKSIIGQE FVCSKEGFRL 60 KKCNQACNCD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g076330.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009593	1e-110	Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0018O15, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068484.1	1e-31	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025884696.1	3e-33	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_025884722.1	2e-32	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025884850.1	1e-31	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025888960.1	4e-31	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7HR27	1e-41	A0A3Q7HR27_SOLLC; Uncharacterized protein
STRING	Solyc08g076330.1.1	1e-45	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-12	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Solyc08g076330.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]