PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g076100.2.1
Common NameLOC101253816
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 410aa    MW: 43571.9 Da    PI: 7.4671
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g076100.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.42.4e-21305367163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ el++l+ e ++l s++
  Solyc08g076100.2.1 305 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRAELSRLRSEHDQLASQN 367
                         89*********************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-29998IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.4E-52137272No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-18298367No hitNo description
SMARTSM003389.7E-22305369IPR004827Basic-leucine zipper domain
PfamPF001709.0E-20305367IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403307370IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-11308365No hitNo description
CDDcd147022.54E-23310361No hitNo description
PROSITE patternPS000360312327IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGSSDIDKSS KEAKESKETK TPNSQEQASS TATGTANPEW PGFQGYSPMP PHGFMASSPQ  60
AHPYMWGVQH LMPPYGTPPH PYVTMYPHGG IYAHPSIPPG SYPFSPFAMP SPNGVAEVAV  120
NTSSNTELDG KSSEVKEKLP IKRSKGSLGS LNMITGKNTE LGKTSGASAN GVYSKSAESG  180
SEGSSEGSDA NSQNESPMKS AGRQDSAEEA SQNGNSAHSS QNGGTSAPHS LVNQTMAIMP  240
MSAVGAGGIP GPTTNLNIGM DYWNAAASPN IPAIHGKVPS ASVAGGIVNA GSRDIVQSQM  300
WIQDERELKR QRRKQSNRES ARRSRLRKQA ECDELAQRAE VLKEENASLR AELSRLRSEH  360
DQLASQNASL KERLGEVSGR DDPRPSRNDI HLNKDTQHSS QTEPKQGGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327RRSRLRK
2321328RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.1360.0callus| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g076100.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139800.0Lycopersicon esculentum clone 133025R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245929.10.0bZIP transcription factor 16 isoform X2
RefseqXP_019070798.10.0bZIP transcription factor 16 isoform X2
SwissprotQ501B21e-167BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A3Q7HRI60.0A0A3Q7HRI6_SOLLC; Uncharacterized protein
STRINGSolyc08g076100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-157basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]