PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g066190.1.1 | ||||||||
Common Name | LOC101245867 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 386aa MW: 45385.2 Da PI: 8.5438 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.5 | 1.1e-11 | 179 | 220 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e+l+++ k++G++ Wk+Ia ++g + + ++k+ w+ + Solyc08g066190.1.1 179 KWTEEECEILLKLQKEHGNN-WKRIADELG--KHRRHVKDTWRRL 220 8*****************99.********9..6778999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0071 | 103 | 174 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.562 | 173 | 225 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-7 | 176 | 223 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.04E-11 | 177 | 234 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.34E-6 | 179 | 221 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-10 | 179 | 231 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.7E-13 | 180 | 238 | No hit | No description |
PROSITE profile | PS50090 | 8.304 | 222 | 290 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.005 | 226 | 292 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-8 | 232 | 294 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.91E-6 | 270 | 345 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.143 | 292 | 345 | IPR017877 | Myb-like domain |
SMART | SM00717 | 54 | 296 | 347 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MERYVSKSRN DGNKSRKLKK MYDTEDIHED VDLSSSIEIE EKNKTDKGNI KKTKSVKLGR 60 SSEDPTHEKS GKRVRFSGQV QIFPSLNHTS DEKHEIEEEN LLQGKRFSKL EDEIVKEAVH 120 KYIELHNLGE QGLKKVLNAR SYPEIKGCWK EIGRSIPYRP TIAVYSRAQI LFRRSESRKW 180 TEEECEILLK LQKEHGNNWK RIADELGKHR RHVKDTWRRL KQSNQNKGSW TQEEYQNLFD 240 LVNTDLRLKL SEEKKSKHGM LRDNIAWNAI SENLSTRNPT NCCLKWYNQL TSSMVDKGEW 300 ADVDDYRLID ALFELDASCI EDVDWDNLLD HRHGEICRKR WNQMILHIGQ LGNKSFVDQV 360 EVLAKRYRPD LVEVREAWDN KPIVP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g066190.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009270 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0069E09, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010325066.1 | 0.0 | cyclin-D-binding Myb-like transcription factor 1 | ||||
TrEMBL | A0A3Q7HNG3 | 0.0 | A0A3Q7HNG3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g066190.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1029 | 14 | 29 | Representative plant | OGRP5322 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-126 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g066190.1.1 |
Entrez Gene | 101245867 |
Publications ? help Back to Top | |||
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