PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g006260.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 29393.4 Da PI: 6.1745 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.2e-14 | 10 | 93 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffk l +k++ l +p f+ ++ +g +e++ l + g++W vkl ++++ l++GW +F+++++Lk gD+++F+++g+ ef Solyc08g006260.1.1 10 FFKPL--LPGFKNS-LKIPDGFL-KYlEGCEEKG--RALLKKGGKKWVVKL--NGQK----LEEGWGQFAEEHDLKLGDMLIFRHEGDLEF-- 88 66777..6677776.********.5557776665..677799*********..8888....***********************8886555.. PP EEEEE CS B3 93 vvkvf 97 v+vf Solyc08g006260.1.1 89 DVTVF 93 77776 PP | |||||||
2 | B3 | 49 | 1.1e-15 | 141 | 222 | 5 | 89 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++++ l++g l++p kfa+++g+ + ++ l+++de+ rsW++++ + +++++++ W+eF an++k gD ++F+++++ e Solyc08g006260.1.1 141 TVKPYCLRNGYLRVPCKFAKANGLTN-KECGLIIRDERQRSWNLRI--YTSCSQVYIGGRWSEFRAANDIKKGDQIMFEVVSNGE 222 578999****************7664.3346999************..88888999***********************887633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-19 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.28 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.73E-10 | 8 | 94 | No hit | No description |
SuperFamily | SSF101936 | 1.12E-18 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.5E-13 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-10 | 17 | 92 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-17 | 135 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.5E-8 | 137 | 231 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.06E-17 | 137 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.743 | 137 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-14 | 140 | 223 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.29E-13 | 143 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEVTSVQPHF FKPLLPGFKN SLKIPDGFLK YLEGCEEKGR ALLKKGGKKW VVKLNGQKLE 60 EGWGQFAEEH DLKLGDMLIF RHEGDLEFDV TVFNLNHCDR EYAEYEEEEE EVRTVEETST 120 NFEFKEGSTH IPFGQSQFIC TVKPYCLRNG YLRVPCKFAK ANGLTNKECG LIIRDERQRS 180 WNLRIYTSCS QVYIGGRWSE FRAANDIKKG DQIMFEVVSN GEQPIWNFHG WQRITTDTIW 240 CFFVKELWLH L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16789 | 0.0 | fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g006260.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009283 | 1e-175 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010324528.1 | 1e-139 | B3 domain-containing protein REM14 isoform X2 | ||||
TrEMBL | A0A3Q7HH76 | 1e-135 | A0A3Q7HH76_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g006260.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 | Representative plant | OGRP2682 | 2 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 4e-31 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g006260.1.1 |
Publications ? help Back to Top | |||
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