PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g005900.2.1

Common Name

LOC101253209

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 327aa MW: 37790 Da PI: 9.0479

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g005900.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.8	1.8e-20	53	135	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ qe+++ i++r e+e +++++k k lWe v++++ erg++rs++qCk+kw+ l +ryk ++++ ++ ++pyfd+l+ Solyc08g005900.2.1 53 WSTQETRDFIAIRGELEMEFSSAKrsNLKSLWEIVAARINERGYRRSAEQCKSKWKTLINRYKGKETSDPDN----GGQFPYFDELH 135 ******************986522669********************************9999984....4469***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.631	45	111	IPR017877	Myb-like domain
SMART	SM00717	0.0034	49	113	IPR001005	SANT/Myb domain
Pfam	PF13837	9.9E-21	52	137	No hit	No description
CDD	cd12203	6.68E-19	53	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MFGGSNEKLG PFTQRLMLPQ HPLHLLPGAG GSSGSGLGGD DEFPKRDERV PPWSTQETRD 60 FIAIRGELEM EFSSAKRSNL KSLWEIVAAR INERGYRRSA EQCKSKWKTL INRYKGKETS 120 DPDNGGQFPY FDELHALFSS NMNNVHRVPI ESEAGSQQAR KRPRGTSRDR SSEEISEDEE 180 GYACESDEVK LGRSNVAPKK KPEKEKRPRT SNAEKASRQA SFGSSINNNT GRAVDNIQEM 240 LKEFFQHQLR IEMQWRETTE KRAREREAFE QEWRSSMEKL ERDRMMIEQS WREREEQRRT 300 REETRAEKRD ALLTTLLNKL IGENHP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	164	ARKRPRG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.20545	0.0	callus\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g005900.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013276	0.0	Lycopersicon esculentum clone 134854R, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244448.1	0.0	trihelix transcription factor GT-3b
TrEMBL	A0A3Q7HJV1	0.0	A0A3Q7HJV1_SOLLC; Uncharacterized protein
STRING	Solyc08g005900.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-28	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc08g005900.2.1
Entrez Gene	101253209

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]