PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g066220.2.1
Common NameSlWRKY2
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 740aa    MW: 79854.6 Da    PI: 6.4786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g066220.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.2e-32323380260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  +++++ei+Y+g Hnh+k
  Solyc07g066220.2.1 323 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPTCPVKKKVERSP-EGHITEIIYKGAHNHPK 380
                         8****************************************.***************85 PP
2WRKY104.17.5e-33534592159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Solyc07g066220.2.1 534 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 592
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.905317381IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-28320381IPR003657WRKY domain
SuperFamilySSF1182902.09E-25321381IPR003657WRKY domain
SMARTSM007748.1E-36322380IPR003657WRKY domain
PfamPF031067.3E-25323379IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37519594IPR003657WRKY domain
SuperFamilySSF1182901.44E-28526594IPR003657WRKY domain
PROSITE profilePS5081138.733529594IPR003657WRKY domain
SMARTSM007746.6E-38534593IPR003657WRKY domain
PfamPF031065.1E-25535592IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MGGFDDHVAI MGDWMPPSPS PRTFFSSLLG DDGGSRLSFD GTNETSGNLA SGPQEHVGNS  60
DGVDTAPAAI SEPQPVKLSV PSDQKMNSRG GGLLERIAAR AGFNAPKLNT ESLRPADLRQ  120
NQGVRSPYLT IPPGLSPTTL LESPVFLSNS LVQPSPTTGK FLFSSGIDNR NSALMMEDTD  180
KRKDNALESI NSSSFSFKPV PETAPSLFPG TTSRSWLQVN PSNFSQQGFP NIEVSVHSQN  240
SLVSHRVEAT QNPTQNGTLQ QSSDFPRFSA EKDVMANNVT LDSRTFQTVG SAVDHSPPLD  300
EPQDEDIDQR GGGDPNVAGA PAEDGYNWRK YGQKQVKGSE YPRSYYKCTH PTCPVKKKVE  360
RSPEGHITEI IYKGAHNHPK PPPNRRSALG STNSLGDLQV DGAEQGASGV NGDLGQANFH  420
KAPGGGGGFD WRNNNRDANL GSEHCNRSAP FSAQNNTRLE SGDAVDVSSN FSNDEDEDDR  480
GTHGSVSQGY EGEGDESESK RRKLETYSAD MTGATRAIRE PRVVVQTTSE VDILDDGYRW  540
RKYGQKVVKG NPNPRSYYKC TSAGCNVRKH VERASHDLKS VITTYEGKHN HDVPAARNSS  600
HVNSGASNTH PASVTAPAQN HLHRPEAAQL QNAMARFDRQ PSLGSFGLSG RPPQLGPNPG  660
FSYGMNQQGG LSSLAMAGFH PNQNKPGEVP MHPYLGQPRP MHDMGFMFPK EEPKVEPLSD  720
PGPTAYQQFL NSLSLGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36323595878Probable WRKY transcription factor 4
2lex_A1e-36323595878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.195340.0callus| flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g066220.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3033430.0Lycopersicon esculentum mRNA for hypothetical protein (ORF1), clone 10
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234646.20.0WRKY transcription factor 2
RefseqNP_001300944.10.0WRKY transcription factor 2
RefseqNP_001300945.10.0WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLQ9ARC70.0Q9ARC7_SOLLC; Uncharacterized protein
STRINGSolyc07g066220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-170WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Rossberg M, et al.
    Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes.
    Plant Cell, 2001. 13(4): p. 979-88
    [PMID:11283350]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  6. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]