PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g066160.1.1
Common NameLOC101258975
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 332aa    MW: 36791.2 Da    PI: 6.6771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g066160.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.7e-0790110323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cgk+F++  +L  H+r+H
  Solyc07g066160.1.1  90 CKVCGKVFPSMKSLFGHMRSH 110
                         ********************9 PP
2zf-C2H216.13.3e-05243265123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ CgksF ++  L  H ++H
  Solyc07g066160.1.1 243 YECNTCGKSFATHQALGGHKSSH 265
                         99**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-53564No hitNo description
PfamPF139121.6E-83860IPR007087Zinc finger, C2H2
SMARTSM003550.343860IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8893865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PROSITE profilePS501579.70288115IPR007087Zinc finger, C2H2
SMARTSM003550.003188110IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-989112IPR007087Zinc finger, C2H2
SuperFamilySSF576677.7E-1089110No hitNo description
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-490110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.7E-10238265No hitNo description
PfamPF139124.2E-9243266IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.78243270IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-4243265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03243265IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGTLLINQIS EKEVLGDEKD DVMGFGDEDE ISKDNKRRIC RVCKKVFGSG KALGGHMRIH  60
VESRSKKEKS KPREEVDVEN CNNDELVPIC KVCGKVFPSM KSLFGHMRSH PEREWRGILP  120
PHLKSNDVKK AKKTASVPGW SVTAKRGRKP NAEEEDEQLQ DAVHHLMLLA NGDSIESVVT  180
GHDHTPEEEL EKTNSNSLTS KAENEEFVSE ELDRKKKKRK LRHLNSVHDS PASVAVTATP  240
EKYECNTCGK SFATHQALGG HKSSHNKLRI VIENSNDSII EEAAASSSKL LGDSKLSTTG  300
GRIADFDLNE LPSDHDNELA GNPDYFPFFS I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220DRKKKKRKL
2213218RKKKKR
3213219RKKKKRK
4213220RKKKKRKL
5214219KKKKRK
6215220KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g066160.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103660.0Solanum lycopersicum chromosome 7 clone C07HBa0309F18, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244329.20.0zinc finger protein ZAT2, partial
TrEMBLA0A3Q7HG740.0A0A3Q7HG74_SOLLC; Uncharacterized protein
STRINGSolyc07g066160.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Representative plantOGRP706138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-21C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]