PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g045520.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 654aa MW: 75556.1 Da PI: 6.8527

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g045520.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.6	2.4e-24	32	123	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ HnHe Solyc07g045520.2.1 32 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHE 121 69******************8888.**************************************998766789*********** PP FAR1 89 la 90 l Solyc07g045520.2.1 122 LL 123 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-22	32	123	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-23	256	347	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	527	562	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-6	535	561	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	537	564	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MTKSETASSS SQDVVFTPYV GQIFKSDDEA FEYYSNFARK NGFSIRKARS TESQNLGIYR 60 RDFVCYRSGF NQPRKKANVE HPRDRKSVRC GCDAKLYLTK EIVDGVAQWY VSQFSNVHNH 120 ELLEDDQVRL LPAYRKIQEA DQERILLLSK AGFPVNRIVK VLELEKGVQP GQLPFIEKDV 180 RNFVRTCKKT VQENDALITE KRENDLLELL EACKASEQKD EGFVYSFTTD ENGRVENIAW 240 SYGHSLQAYS FFGDAVIFDT TYRSITYNML FGVWFGIDNH GNALFLGCVL LQDETSQSFS 300 WALQSFVRFM RGRQPQTIVT DIDSGLRDAI ASEMPTTKHV ICIWQVLSKL SSWFSLPLGL 360 QYPDFKSEFD MLCRLENVED FEHQWNQLVA RFGLGSDKHI ALLLSYRASW QISYMRNFFL 420 ARTMSIEYWK LVETFMKNIL SPQSSLLLFF EQVGLACNFG NHKKEKQLYM PAKTCLPLEE 480 HARSILTPYA FNIMQHEVML SMQYAITEMA NSTYLVRHYK KMEAECLVIW IPEDEQVHCS 540 CKEFEHSGIL CRHSIRVLVS KNYFQVPEKY FPLRWRPESS LAPLDDSVIQ SSGNKYSQVF 600 HALSGSLYSE SFISKQRFNY VNRELKQILE HVQKMPTVDE VAASSAPISV SEL*

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MTKSETASSS SQDVVFTPYV GQIFKSDDEA FEYYSNFARK NGFSIRKARS TESQNLGIYR  60
RDFVCYRSGF NQPRKKANVE HPRDRKSVRC GCDAKLYLTK EIVDGVAQWY VSQFSNVHNH  120
ELLEDDQVRL LPAYRKIQEA DQERILLLSK AGFPVNRIVK VLELEKGVQP GQLPFIEKDV  180
RNFVRTCKKT VQENDALITE KRENDLLELL EACKASEQKD EGFVYSFTTD ENGRVENIAW  240
SYGHSLQAYS FFGDAVIFDT TYRSITYNML FGVWFGIDNH GNALFLGCVL LQDETSQSFS  300
WALQSFVRFM RGRQPQTIVT DIDSGLRDAI ASEMPTTKHV ICIWQVLSKL SSWFSLPLGL  360
QYPDFKSEFD MLCRLENVED FEHQWNQLVA RFGLGSDKHI ALLLSYRASW QISYMRNFFL  420
ARTMSIEYWK LVETFMKNIL SPQSSLLLFF EQVGLACNFG NHKKEKQLYM PAKTCLPLEE  480
HARSILTPYA FNIMQHEVML SMQYAITEMA NSTYLVRHYK KMEAECLVIW IPEDEQVHCS  540
CKEFEHSGIL CRHSIRVLVS KNYFQVPEKY FPLRWRPESS LAPLDDSVIQ SSGNKYSQVF  600
HALSGSLYSE SFISKQRFNY VNRELKQILE HVQKMPTVDE VAASSAPISV SEL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25275	0.0	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g045520.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253633	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-4f18 map 7, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323893.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_025887813.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A3Q7HDD8	0.0	A0A3Q7HDD8_SOLLC; Uncharacterized protein
STRING	Solyc07g045520.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Solyc07g045520.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]