PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g045030.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 38447.5 Da PI: 9.3512 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.1 | 5.1e-51 | 31 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l pGfrFhPtdeelv +yLk+kve+k+++l + ikevdiyk++PwdLpk + ++kewyfFs r +ky+++ r+nr+t sg+Wkatg d Solyc07g045030.2.1 31 LLPGFRFHPTDEELVGFYLKRKVENKRIKL-DLIKEVDIYKHDPWDLPKVMGRvgDNKEWYFFSMRGRKYKNSVRPNRVTGSGFWKATGID 120 579***************************.99***************6443343677********************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v+s+ ++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Solyc07g045030.2.1 121 KPVHSQsNELCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 160 *****844445***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-54 | 30 | 194 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.229 | 31 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-25 | 33 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MSEKRVEKME NTIVCESKIK NSDDDEENDL LLPGFRFHPT DEELVGFYLK RKVENKRIKL 60 DLIKEVDIYK HDPWDLPKVM GRVGDNKEWY FFSMRGRKYK NSVRPNRVTG SGFWKATGID 120 KPVHSQSNEL CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPIWKTNTSN GQHLPNLKNI 180 AAEAEVWTLC RIFKRISNYK RFTPDWKQQQ PVVKQSFVDT SSKACSVQSE ISDDQSNNVI 240 NFKKMAFPQK SIMNASCGGN LNYQVDQRNS YYNNSQLITT MPDQSPFTSS NSIFWNTRAE 300 DQEYLFSHGN WDELKSVVDL AIDPRSLFGF K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 31 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 31 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 31 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 31 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-47 | 31 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-47 | 31 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-47 | 31 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-47 | 31 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-47 | 31 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-47 | 31 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-47 | 31 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-47 | 31 | 201 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 31 | 201 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 31 | 201 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.22802 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g045030.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215362 | 1e-13 | Solanum lycopersicum chromosome 2 clone C02HBa0027B01, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010323924.2 | 0.0 | transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
Swissprot | Q9SK55 | 1e-90 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3Q7HA85 | 0.0 | A0A3Q7HA85_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g045030.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-89 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g045030.2.1 |