PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g043260.2.1
Common NameLOC101257387
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 822aa    MW: 93703.5 Da    PI: 7.8571
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g043260.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.2e-2176157290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +Y+eYA++vGF +++++s++sk++g++++ +  Cs+ g+++e+ ++       r+  +t+Cka++++k+++dgkw ++++ +eHnHe++
  Solyc07g043260.2.1  76 YYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGTKRESGSS-------RSCPKTDCKASIHLKRKQDGKWFIHSFMKEHNHEIC 157
                         8***************************************999877.......9999******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1976157IPR004330FAR1 DNA binding domain
PfamPF105517.0E-27240333IPR018289MULE transposase domain
PROSITE profilePS509669.606520556IPR007527Zinc finger, SWIM-type
PfamPF044349.6E-7527554IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5531558IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MEIDLRLSSG QDKRLDLYVD TNAIDDSIPS HVGKENVDGN GIGMDIVDVD IIDNGIENGE  60
PEKGIEFDTK EAAYAYYREY ARSVGFGITI KASRRSKKSG KFIDVKIACS RFGTKRESGS  120
SRSCPKTDCK ASIHLKRKQD GKWFIHSFMK EHNHEICQDD FYYSVKGRSK KSAGVVYQKK  180
GLQLALDEGD VELLLDTLAL MQAERPNSYY AIDFDKEKRM RNVFWIDAKG RNDYVHFCDV  240
IYLDTYYIRN KYKVPFLPIV GVNHHFQFLL LGCALVGDES SSTFNWLMST WLRAVGGQSP  300
RVVITDDEIS LKEAAEEVFP KAQHCFCLWN VMRKVSQNLV DKITKPEAFV KKLKKCMWFL  360
LKEEEFEKRW WKMVDSFKLR DDDLIRSLFE NRTKWVPVYM RNTFLAGLST FERSESVSSF  420
FERYISSETT FKEFIDQYKL FVHEMYEEEA KADIETRHRL PTIKTLSPYE KQMSTVYTNA  480
VFMKFQAEVF GVAACTILNE GEEGTEKLYR VNDREKHQSF MVSWCARESC IVCSCHFFEY  540
AGILCRHAIT VLQVSGVPNI PALYKLERWT REAKTKGRAC GIPSNPHHRI QRLNDLCKLA  600
AKFGEIGSLS WETYELAVNT LQAALHDCVN ANNSVKSALV SNISFSQCDP NFNEEIQGGN  660
MAKSSKRKKV QKMHKVQSDV EVLSTRIQDS SLQMDQSNSK LPTHEDAFLA QRHVQGMDLS  720
SRMATIAGYY APPHQSVHGL GKLSSFSMLQ DRYCSNHQAS QSVLGNLNYI SAHSGHYSPQ  780
SIQGLGQLSV RAPLVLPSFN IQENSSDMDN STSVTGKHLQ Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.25490.0cell culture| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g043260.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536060.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-18e18 map 7, complete sequence
GenBankAC2536430.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-22m17 map 7, complete sequence
GenBankAC2536750.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-42o4 map 7, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243647.10.0protein FAR1-RELATED SEQUENCE 2 isoform X2
TrEMBLA0A3Q7HCC90.0A0A3Q7HCC9_SOLLC; Uncharacterized protein
STRINGSolyc07g043260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.40.0FAR1-related sequence 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]