PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g040920.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23386.4 Da PI: 9.6311 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40 | 9.1e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l +v+++G g Wk I r R+ ++k++w+++ Solyc07g040920.2.1 5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56 79***********************************9************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.042 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 9.13E-21 | 6 | 57 | No hit | No description |
Pfam | PF13921 | 1.2E-8 | 8 | 62 | No hit | No description |
SMART | SM00526 | 1.2E-14 | 117 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 2.18E-12 | 117 | 180 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.1E-12 | 119 | 180 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 20.889 | 119 | 209 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 2.1E-9 | 122 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000784 | Cellular Component | nuclear chromosome, telomeric region | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA 60 NGQGPRDKSR TPKAKANPDA AAAPLAITYA PLSSTLVPQD ASADTVMEDS SKCALDGKTA 120 SKYNQMIYDA LSSLNEPNGS DTSKLVNFIE QRHEVPQNFR RLLSSRLRRL VQQDKLEKVT 180 LSFLHLSAGL LINNCFCNFF CFQKASPNY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.7138 | 0.0 | fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g040920.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU927996 | 9e-32 | S.lycopersicum DNA sequence from clone LE_HBa-61A10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580279.1 | 1e-109 | PREDICTED: telomere repeat-binding factor 4 isoform X1 | ||||
Swissprot | Q8W119 | 2e-54 | SMH4_MAIZE; Single myb histone 4 | ||||
TrEMBL | A0A0V0I2T0 | 1e-116 | A0A0V0I2T0_SOLCH; Putative telomere repeat-binding factor 4-like | ||||
STRING | Solyc07g040920.2.1 | 1e-155 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2504 | 23 | 55 | Representative plant | OGRP855 | 16 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 5e-50 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g040920.2.1 |
Publications ? help Back to Top | |||
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