PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g019550.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARR-B | ||||||||
Protein Properties | Length: 368aa MW: 41972.8 Da PI: 7.0031 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 71.1 | 1.6e-22 | 190 | 243 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt LH++Fv++v++L G ++A P++il+ m+ + Lt+ hv+SHLQkYR+ Solyc07g019550.1.1 190 KTRIVWTDPLHNKFVDVVSKL-GMKEAHPRKILDRMDTPELTRIHVASHLQKYRM 243 68*******************.9*******************************7 PP | |||||||
2 | Response_reg | 52.5 | 2.8e-18 | 15 | 121 | 2 | 108 |
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 l+vd +++ + + +++l+k+++ ev +++++++al l+ + ++l+++ + mp+++G++l +ei+++ ++p+ + + ++e+++++ l Solyc07g019550.1.1 15 LLVDVDDSCLLITATFLKKSKF-EVVTVKSAKDALGVLRSSGlsFELVVTEVHMPEINGFQLQQEIAKKF-NIPVAFYSVDEKESTIIKGL 103 789999999*************.***************999888**********************9999.9******************* PP HTTESEEEESS--HHHHH CS Response_reg 91 kaGakdflsKpfdpeelv 108 + G+ f Kp+++++++ Solyc07g019550.1.1 104 ESGVILFMGKPISQNDII 121 *************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 6.9E-23 | 12 | 163 | No hit | No description |
SMART | SM00448 | 1.2E-12 | 12 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 5.83E-20 | 13 | 143 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 26.515 | 13 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-14 | 15 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.01E-16 | 15 | 121 | No hit | No description |
SuperFamily | SSF46689 | 6.81E-16 | 188 | 247 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 188 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-20 | 190 | 243 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEEQNNQFFE IIRCLLVDVD DSCLLITATF LKKSKFEVVT VKSAKDALGV LRSSGLSFEL 60 VVTEVHMPEI NGFQLQQEIA KKFNIPVAFY SVDEKESTII KGLESGVILF MGKPISQNDI 120 IFLWKYAAMR KKIYKGKQVI NQQNQDDANE RIPHEVIHIE SSSPDSERDK SARKSEENKS 180 EHSSSPPSKK TRIVWTDPLH NKFVDVVSKL GMKEAHPRKI LDRMDTPELT RIHVASHLQK 240 YRMDLKKDSR VQQLMPENSN VVDHVIETDH QDFHSCQREK ELARILCRHI NKMSHNIGLG 300 EASIELSTLQ QSYEITGNGG TGTTTDDFVM LDNVYSTELT SIISGSQLNV QSSNMVRFFK 360 FFRLFSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-14 | 189 | 249 | 4 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g019550.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243095.1 | 0.0 | two-component response regulator ARR14-like | ||||
TrEMBL | K4CCR7 | 0.0 | K4CCR7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g019550.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3290 | 20 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01760.1 | 3e-33 | response regulator 14 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g019550.1.1 |
Publications ? help Back to Top | |||
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