PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g083600.1.1
Common NameLOC101244009
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 621aa    MW: 70492.9 Da    PI: 5.3202
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g083600.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.3e-21484580295
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +kvl++sdv+++gr+vlpkk ae+h   ++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +FvkangL+egDf+v++   +
  Solyc06g083600.1.1 484 QKVLKQSDVNNLGRIVLPKKEAERHlpHLETRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIYA--D 571
                         79*************************999999********7778*******99777777777777.********************5..4 PP

                         .SEE..EEE CS
                  B3  88 .sefelvvk 95 
                          ++++++++
  Solyc06g083600.1.1 572 mKCGKYLIR 580
                         488877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-28475589IPR015300DNA-binding pseudobarrel domain
CDDcd100156.89E-34481582No hitNo description
SuperFamilySSF1019368.83E-23482575IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-19483585IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771483585IPR003340B3 DNA binding domain
PfamPF023622.3E-17484579IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MERELHGVDN ENENTNLVDI QMLQQQQQHD CTDFDPMDET DIWLNENFST DFTSLQDFPC  60
MSSSSSTSFS PPTESDPSSG VVLKSDADEQ DFDKKIDTIG DQECLNVMDN VGYIDVNEFL  120
DPMISFLHNE NPQEQQQQQQ QQQLLPQEDD DQGFSFFQGD SELALMFFEW LKQNRDYICA  180
EDMRSIKLKR STIESASKRL GSTKEGKKQL LRLILDWVEQ HRLQKKQMRE AEAINQQALQ  240
NSVPYNFDPN ACFYPPQWIP NAPFPDSSTP IMTGPIQGYT SDPYSNGGLF PPPYSQTMSG  300
GATSPASAEY QPMDTSQSWS PSQFTMATTS QYNPFPENDS TNNVAMPDQS LFGAQYDPYQ  360
LFDGNGEIVP RLGSCATKEA RKNRMARQRR LRPHHYRHQA RNPRQITNEQ SVMMAGEINN  420
CVMTQANNPG NWVCWPSPPM AMVSQSLPPE RPAMQSQNQQ KQVSTSADKK QAFKSEKNLK  480
FLLQKVLKQS DVNNLGRIVL PKKEAERHLP HLETRDGISI AMEDIGTSRV WNMKYRFWPN  540
NKSRMYLLEN TGDFVKANGL QEGDFIVIYA DMKCGKYLIR GVKVRQNGPK SEGKKQMKKN  600
PRKLSSAAAI SSSPVAQAVR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-374795831105B3 domain-containing transcription factor FUS3
6j9b_D3e-374795831105B3 domain-containing transcription factor FUS3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.244100.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g083600.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242390.10.0B3 domain-containing transcription factor ABI3
TrEMBLA0A3Q7H2K30.0A0A3Q7H2K3_SOLLC; Uncharacterized protein
STRINGSolyc06g083600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-111B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]