PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g083590.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 580aa MW: 65439.5 Da PI: 7.0303

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g083590.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.8	5.5e-20	446	542	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +kvl++sdv+ +gr+vlpkk ae+h +++++ ++ + +ed r+W++k+++ ++ks++y+l+ ++ +Fv angL+egDf+v++ + Solyc06g083590.2.1 446 QKVLKQSDVGHLGRIVLPKKEAESHlpQLETRDGISIAMEDIGTcRVWNMKYRFwpNNKSRMYLLE-NTGDFVVANGLQEGDFIVIY--AD 533 79***********************99999*****6666***99777777777777.******************..45 PP .SEE..EEE CS B3 88 .sefelvvk 95 ++++++++ Solyc06g083590.2.1 534 iKCGKYLIR 542 588877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-26	439	553	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10015	1.58E-34	443	544	No hit	No description
SuperFamily	SSF101936	1.57E-21	444	538	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	8.6E-18	445	547	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.812	445	547	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.6E-16	446	541	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MKRELNDVYY GGNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS 60 SSTSNSLPTE QSDPSSGWAV QKSDADEQDF DTISDQECLN VMDLIDGDHE FLDPMISFFN 120 QQQKEQANEE QVSIFQGDSE LALMFLDWLK QNKDNISAED MRSIKLKRST IESASKRLGS 180 TKEGKKQLLR LILDWVEQHR LQKKQMREEQ SIQNSAPFNF NNPNACFYNA SFTDSSSVMT 240 GPIQGYFGDL NSNGSLFVPP YNQTMSGSST SQSWSQSQFI MANASQYNRF PENNITNNVA 300 IPDQPLFSAQ YDQYQIFDGS GERLARLGTC ATKEARKIRM ARQRRVPLHH YRHQTQNQRQ 360 ISNEKSVMMG RKINNCAISQ ANNPGNWVYW PCAAAAPPIA MVPLADTPQS LPMERSPVQS 420 QKHQKHGSTD KRQACKTEKN LKFLMQKVLK QSDVGHLGRI VLPKKEAESH LPQLETRDGI 480 SIAMEDIGTC RVWNMKYRFW PNNKSRMYLL ENTGDFVVAN GLQEGDFIVI YADIKCGKYL 540 IRGVKVRPNG AKSDGMQPAK KIVRKIAAVA SSPFAQAVG*

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MKRELNDVYY GGNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS  60
SSTSNSLPTE QSDPSSGWAV QKSDADEQDF DTISDQECLN VMDLIDGDHE FLDPMISFFN  120
QQQKEQANEE QVSIFQGDSE LALMFLDWLK QNKDNISAED MRSIKLKRST IESASKRLGS  180
TKEGKKQLLR LILDWVEQHR LQKKQMREEQ SIQNSAPFNF NNPNACFYNA SFTDSSSVMT  240
GPIQGYFGDL NSNGSLFVPP YNQTMSGSST SQSWSQSQFI MANASQYNRF PENNITNNVA  300
IPDQPLFSAQ YDQYQIFDGS GERLARLGTC ATKEARKIRM ARQRRVPLHH YRHQTQNQRQ  360
ISNEKSVMMG RKINNCAISQ ANNPGNWVYW PCAAAAPPIA MVPLADTPQS LPMERSPVQS  420
QKHQKHGSTD KRQACKTEKN LKFLMQKVLK QSDVGHLGRI VLPKKEAESH LPQLETRDGI  480
SIAMEDIGTC RVWNMKYRFW PNNKSRMYLL ENTGDFVVAN GLQEGDFIVI YADIKCGKYL  540
IRGVKVRPNG AKSDGMQPAK KIVRKIAAVA SSPFAQAVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	2e-37	441	545	1	105	B3 domain-containing transcription factor FUS3
6j9b_D	2e-37	441	545	1	105	B3 domain-containing transcription factor FUS3
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.9711	0.0	fruit\| root

Function -- GeneRIF ? help Back to Top
SlABI3-F (full length) and SlABI3-T (truncated) have similar and distinct functionality in the abscissic acid signaling, dependent on which tissue/organ they accumulate in. [PMID: 23504452]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g083590.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY911399	0.0	Lycopersicon esculentum ABI3 (ABI3) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323011.1	0.0	ABI3 protein isoform X1
Refseq	XP_019069689.1	0.0	ABI3 protein isoform X1
Refseq	XP_025887097.1	0.0	ABI3 protein isoform X1
Refseq	XP_025887098.1	0.0	ABI3 protein isoform X1
TrEMBL	A0A3Q7H5E2	0.0	A0A3Q7H5E2_SOLLC; Uncharacterized protein
STRING	Solyc06g083590.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4270	23	39
Representative plant	OGRP788	17	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-111	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc06g083590.2.1
Entrez Gene	778203

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Gao Y, et al. Functional characterization of two alternatively spliced transcripts of tomato ABSCISIC ACID INSENSITIVE3 (ABI3) gene. Plant Mol. Biol., 2013. 82(1-2): p. 131-45 [PMID:23504452]