PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g082010.2.1
Common NameLOC101257277
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 700aa    MW: 76302.7 Da    PI: 6.2084
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g082010.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-09283303526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ GtC++Gd+C +aHg
  Solyc06g082010.2.1 283 PCPDFRK-GTCQRGDSCEYAHG 303
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.91E-1638166IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.7E-1744184IPR020683Ankyrin repeat-containing domain
PfamPF127962.5E-982155IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01286116IPR002110Ankyrin repeat
PROSITE profilePS5029715.00886164IPR020683Ankyrin repeat-containing domain
CDDcd002042.74E-1488183No hitNo description
SMARTSM002480.0058121153IPR002110Ankyrin repeat
PROSITE profilePS5008811.167121156IPR002110Ankyrin repeat
SMARTSM003561.0E-5278304IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6283303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173283305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4283305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4311341IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.005313337IPR000571Zinc finger, CCCH-type
SMARTSM0035663313336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MQELREVQTL FMCSGSGSEV CSTELAMEGK IQKQKELVPD FSLLLELSAS DDIRNFQKAV  60
EEEGHDINEV GLWYVRRVGV KKMGYEERTP LMVAATFGSK QVLSYMLEKG CVDVNQACGS  120
DRATALHCAI SGGSAALLEV VKLLVDASAD VNLVDSNGKR AVDLISGQSC CLNSRRKILE  180
HLLGGSSTDE VIDQIISEQA EEQLLLTPTV SKFGIEKKEY PVDPSLPDIK NGIYGTDDFR  240
MYIFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPSKYHYS CVPCPDFRKG TCQRGDSCEY  300
AHGIFECWLH PAQYRTRMCK DETNCNRRVC FFAHKPEELR PLYPSTGSAV LSPRSYSSGA  360
SSLDITSITP LALGSPSVMV PPTSTPPMSP SAGASSVGGS LWTCQSSPAT PTLQLPISRL  420
KTAINARDMD IGNGYLMQDQ LMDELSALSS PSRWNSSSAK AAAFAASLND RNGEFSRHGG  480
LNPSNLDDII ANLDAKILSQ LQGLSLDAAS PQLQSPKGMQ MRQNMNQQHM SSYSSSQSSP  540
SFRTSSSYGI DPSNAAATAV LSSRAAAFAK RSQSFIDRSG AGRLPNASAV PSNLSGWGSP  600
DGKLDWGIQK EELNKLRKSA SFGLRSSGSR FPTTSESSVS DSLVEPDVSW VQSPHSPSMT  660
SRQLATMEDQ QYRLNTSRGS ETMPTWVDQL YMEQEQIVH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.146380.0flower| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g082010.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242521.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3Q7H1T70.0A0A3Q7H1T7_SOLLC; Uncharacterized protein
STRINGSolyc06g082010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]