PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g076270.2.1

Common Name

LOC101246932

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 701aa MW: 77121 Da PI: 9.723

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g076270.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	601	650	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Solyc06g076270.2.1 601 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 650 678999******************9988889************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54236	1.65E-8	405	493	IPR029071	Ubiquitin-related domain
CDD	cd01769	0.0011	413	480	No hit	No description
PROSITE profile	PS51294	15.596	596	655	IPR017930	Myb domain
SMART	SM00717	1.2E-7	600	653	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-10	601	651	IPR009057	Homeodomain-like
CDD	cd11660	1.40E-16	602	652	No hit	No description
SuperFamily	SSF46689	1.2E-15	602	683	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031627	Biological Process	telomeric loop formation
GO:0000783	Cellular Component	nuclear telomere cap complex
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MVLQKRLDYG FNGYQVPPIP RATRSVRRRG IIKRKADGNG TCHFDLLATV AGKLLGEGES 60 SPDSKGSVKG KEKGAIVKDE KVKEAEDKSL KEKSYTEGCY ERGFFISELV SQAPVVNRSL 120 SELPHVQNDT ISRPASASMS SDCSEKLLFA KQFVNGESSE EHENFCSKTE REASGCGVFS 180 SCTLDTENDK QMKIELSNKA KVLTDKGTAI SSSKFPDVWD KKPSTLVTSD ENVKLSLSTY 240 PAPSRSFPVI RDNVKLAYKD DDENSGCTQP STPNKASGAA PCLRDRPIKK LLASKYWKEN 300 LKFDDEGHAN SGGKAMHVYY NRNIGYKRDG YKHQRSQRDF PFKKRKVFKC GSFSNSDGEM 360 STDGISSSPT NDLHGNASGS SKASSGGCAA VGTSVFSGGR PFLRPGDSHV KFRIKSFKVP 420 ELFVDIPENA TIGSLKRTVM EAVTAILGGG LRIGVVFQGK KVRDDNKTLL QTGISHDYKL 480 DALGFSLEPN PVQTSQPLGQ DCRSCVLPYE TPQPLTRCPS PSTVIHTGIH QGRSDDHTGT 540 SLSTFLESDH ESAPSPHYAA LEKISANSRA LVPLTAVNAE ALSAVPLRKP KRSEATQRRI 600 RRPFSVSEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ 660 RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM KQPSETYLLL *

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MVLQKRLDYG FNGYQVPPIP RATRSVRRRG IIKRKADGNG TCHFDLLATV AGKLLGEGES  60
SPDSKGSVKG KEKGAIVKDE KVKEAEDKSL KEKSYTEGCY ERGFFISELV SQAPVVNRSL  120
SELPHVQNDT ISRPASASMS SDCSEKLLFA KQFVNGESSE EHENFCSKTE REASGCGVFS  180
SCTLDTENDK QMKIELSNKA KVLTDKGTAI SSSKFPDVWD KKPSTLVTSD ENVKLSLSTY  240
PAPSRSFPVI RDNVKLAYKD DDENSGCTQP STPNKASGAA PCLRDRPIKK LLASKYWKEN  300
LKFDDEGHAN SGGKAMHVYY NRNIGYKRDG YKHQRSQRDF PFKKRKVFKC GSFSNSDGEM  360
STDGISSSPT NDLHGNASGS SKASSGGCAA VGTSVFSGGR PFLRPGDSHV KFRIKSFKVP  420
ELFVDIPENA TIGSLKRTVM EAVTAILGGG LRIGVVFQGK KVRDDNKTLL QTGISHDYKL  480
DALGFSLEPN PVQTSQPLGQ DCRSCVLPYE TPQPLTRCPS PSTVIHTGIH QGRSDDHTGT  540
SLSTFLESDH ESAPSPHYAA LEKISANSRA LVPLTAVNAE ALSAVPLRKP KRSEATQRRI  600
RRPFSVSEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ  660
RRGEPVPQEL LDRVLTAHAY WSQQQAKQQM KQPSETYLLL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	2e-55	588	691	4	107	Telomere binding protein TBP1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	336	345	QRDFPFKKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.23221	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269\|PubMed:15364931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g076270.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241221.1	0.0	telomere repeat-binding protein 5 isoform X4
Swissprot	Q6R0E3	1e-127	TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBL	A0A3Q7H474	0.0	A0A3Q7H474_SOLLC; Uncharacterized protein
STRING	Solyc06g076270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3076	23	48
Representative plant	OGRP1391	12	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-123	TRF-like 2

Link Out ? help Back to Top
Phytozome	Solyc06g076270.2.1
Entrez Gene	101246932

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]