PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g075780.1.1 | ||||||||
Common Name | LOC101254394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 155aa MW: 17637.4 Da PI: 9.8421 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg+ Fs L H+r+H Solyc06g075780.1.1 77 HECLICGMEFSMGQALGGHMRRH 99 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.67E-7 | 33 | 99 | No hit | No description |
PROSITE profile | PS50157 | 9.39 | 34 | 56 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.8E-11 | 34 | 58 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.47 | 34 | 56 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.3E-10 | 76 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.12 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MIKIREDKGE VEAQAMANCL MLLSSIDRDR RNSFECKTCK RRFSSFQALG GHRTSHKSTI 60 DIGKFLHGKI SKKRKVHECL ICGMEFSMGQ ALGGHMRRHR APVNEIEHSA KRIPVLKKSN 120 SNERIFCVDL NLTPDENDDF HFWPMPPVPP FLSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14025 | 0.0 | flower| fruit| root |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g075780.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025887528.1 | 1e-111 | LOW QUALITY PROTEIN: zinc finger protein ZAT1 | ||||
TrEMBL | A0A3Q7H3L6 | 1e-107 | A0A3Q7H3L6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g075780.1.1 | 1e-111 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-33 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g075780.1.1 |
Entrez Gene | 101254394 |
Publications ? help Back to Top | |||
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